Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LU633_RS00665 Genome accession   NZ_CP089932
Coordinates   126076..127599 (-) Length   507 a.a.
NCBI ID   WP_016191552.1    Uniprot ID   A0A0M2KI61
Organism   Erwinia tracheiphila strain BHKY     
Function   require for natural transformation (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 120822..125891 126076..127599 flank 185


Gene organization within MGE regions


Location: 120822..127599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU633_RS00640 (LU633_00640) hdfR 121667..122491 (-) 825 WP_016191556.1 HTH-type transcriptional regulator HdfR -
  LU633_RS00645 (LU633_00645) - 122612..122950 (+) 339 WP_016191555.1 DUF413 domain-containing protein -
  LU633_RS00650 (LU633_00650) - 123214..123605 (+) 392 Protein_124 transposase -
  LU633_RS00655 (LU633_00655) - 123742..124705 (+) 964 Protein_125 DDE-type integrase/transposase/recombinase -
  LU633_RS00660 (LU633_00660) - 124783..125891 (+) 1109 Protein_126 IS256 family transposase -
  LU633_RS00665 (LU633_00665) comM 126076..127599 (-) 1524 WP_016191552.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55538.74 Da        Isoelectric Point: 8.0353

>NTDB_id=639221 LU633_RS00665 WP_016191552.1 126076..127599(-) (comM) [Erwinia tracheiphila strain BHKY]
MALSVTYTRAAIGVEAPQVSVEVHLSNGLPALTLVGLPEATVKEARERVRSAILNCGFTFPARRITINLAPADLPKEGGR
YDLPIAIAILAASEQISVNKLEEYEFLGELALNGIIRGVQGAIPAAIAAIGSGRQTILSSDNRSEAGLIRHGNCLLSHTL
LEVCDFLNGQEELKVARYEPQALPPLHGDLQDIIGQQQAKRTLEITAAGGHNLLLIGPPGTGKTMLASRLPGLMPPLSDD
EALESAAIASLVSSNETLRQWRQRPFRAPHHTSSRYALVGGGALPKPGEISLAHNGILFLDELPEFERKTLDALREPIES
GVICISRARAKVIYPARFQLVAAMNPSPTGHHNGTHNRSSPQQILRYLSRLSGPFLDRFDLSLEVPLLPQGTLSNNMHCL
GESSETIRQRVFKARERQLARAGVINQSIGPEEIKWSCSIRQDDARWLEEVLNKLGLSVRAWQRILKVARTIADLAGEEK
IQREHLNESLSYRAIDRLLIHLQKNLQ

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=639221 LU633_RS00665 WP_016191552.1 126076..127599(-) (comM) [Erwinia tracheiphila strain BHKY]
ATGGCATTATCTGTGACTTATACCCGTGCAGCCATCGGAGTGGAGGCACCGCAGGTTTCTGTTGAAGTTCATTTGAGCAA
TGGCCTGCCAGCCCTTACGCTGGTTGGTTTGCCCGAGGCTACCGTTAAAGAAGCGCGTGAACGCGTCCGCAGCGCTATAC
TTAATTGTGGGTTCACTTTTCCTGCCCGGCGTATAACCATCAATCTGGCCCCAGCCGATCTGCCAAAAGAAGGCGGACGC
TATGATTTACCCATCGCTATCGCCATTCTGGCGGCCTCAGAACAAATATCAGTAAACAAACTTGAGGAATATGAATTTCT
TGGAGAACTGGCTCTGAATGGCATCATAAGAGGCGTTCAGGGTGCCATTCCAGCGGCGATAGCGGCTATCGGTTCTGGAA
GGCAGACTATTCTTTCCAGCGACAATCGTTCAGAAGCAGGTTTGATTCGCCATGGCAATTGTCTGCTCAGTCACACCCTG
CTGGAGGTCTGTGATTTTCTGAATGGTCAGGAGGAACTTAAGGTTGCTCGCTATGAGCCACAAGCATTGCCCCCCTTGCA
TGGTGATTTGCAGGATATTATTGGACAGCAACAGGCTAAGAGAACGCTTGAAATCACTGCTGCTGGCGGACATAACTTAC
TATTAATAGGCCCTCCCGGCACGGGCAAAACCATGCTTGCCAGTCGGCTTCCCGGTCTGATGCCTCCCTTAAGCGACGAT
GAAGCGCTGGAAAGTGCAGCGATTGCAAGCCTGGTCAGCAGTAATGAGACGCTGCGTCAATGGCGTCAGCGCCCTTTCAG
GGCTCCCCATCATACCTCTTCTCGTTATGCGCTGGTTGGCGGTGGAGCGCTTCCTAAACCGGGAGAAATCTCTTTGGCAC
ATAACGGCATCCTTTTTCTGGACGAGCTGCCTGAATTTGAACGTAAAACACTGGATGCATTACGGGAACCTATTGAGTCA
GGTGTAATATGTATTTCACGGGCACGAGCTAAAGTTATCTACCCCGCTCGTTTTCAACTGGTTGCAGCGATGAATCCCAG
TCCGACAGGCCATCATAACGGCACGCACAATCGCAGTTCACCACAGCAGATCCTTCGCTATCTTAGTCGCCTGTCCGGCC
CCTTTCTGGACCGTTTTGATCTCTCACTGGAAGTCCCCCTTCTCCCACAAGGCACGCTCAGTAACAATATGCATTGTTTG
GGTGAATCCAGTGAAACAATTCGCCAGCGCGTATTTAAAGCGCGTGAGCGTCAGCTTGCTCGCGCTGGGGTTATTAATCA
GTCAATTGGACCAGAGGAAATTAAATGGAGCTGTAGTATCAGACAGGATGATGCACGCTGGCTTGAGGAGGTGTTGAATA
AGCTGGGGCTGTCTGTTCGCGCCTGGCAGCGTATTCTGAAGGTGGCGCGGACAATTGCAGATTTGGCTGGTGAGGAAAAA
ATACAGCGCGAGCACCTGAATGAAAGTCTGAGCTATCGGGCAATCGATCGGCTACTCATCCATTTACAAAAAAACCTGCA
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2KI61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.13

100

0.621
  comM Glaesserella parasuis strain SC1401

61.933

100

0.619
  comM Vibrio cholerae strain A1552

61.265

99.803

0.611
  comM Vibrio campbellii strain DS40M4

59.245

99.211

0.588
  comM Legionella pneumophila str. Paris

49.105

99.211

0.487
  comM Legionella pneumophila strain ERS1305867

49.105

99.211

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.759

100

0.458