Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LVE68_RS11755 Genome accession   NZ_CP089928
Coordinates   2729152..2730648 (-) Length   498 a.a.
NCBI ID   WP_232940590.1    Uniprot ID   -
Organism   Microbulbifer sp. YPW16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2724522..2737871 2729152..2730648 within 0


Gene organization within MGE regions


Location: 2724522..2737871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVE68_RS11725 (LVE68_11725) rep 2724522..2726555 (-) 2034 WP_232940582.1 DNA helicase Rep -
  LVE68_RS11730 (LVE68_11730) - 2726780..2727049 (+) 270 WP_232940584.1 DUF3565 domain-containing protein -
  LVE68_RS11735 (LVE68_11735) - 2727049..2727516 (+) 468 WP_232940586.1 YaiI/YqxD family protein -
  LVE68_RS11740 (LVE68_11740) - 2727516..2728037 (+) 522 WP_232940587.1 GNAT family N-acetyltransferase -
  LVE68_RS11745 (LVE68_11745) - 2728030..2728599 (+) 570 WP_232940588.1 GNAT family N-acetyltransferase -
  LVE68_RS11750 (LVE68_11750) - 2728618..2729100 (-) 483 WP_232940589.1 isoprenylcysteine carboxylmethyltransferase family protein -
  LVE68_RS11755 (LVE68_11755) comM 2729152..2730648 (-) 1497 WP_232940590.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LVE68_RS11760 (LVE68_11760) - 2730703..2730945 (-) 243 WP_232940591.1 accessory factor UbiK family protein -
  LVE68_RS11765 (LVE68_11765) - 2731413..2732126 (+) 714 WP_232940592.1 TorF family putative porin -
  LVE68_RS11770 (LVE68_11770) - 2732180..2732518 (+) 339 WP_232940593.1 P-II family nitrogen regulator -
  LVE68_RS11775 (LVE68_11775) - 2732599..2733858 (+) 1260 WP_232940594.1 ammonium transporter -
  LVE68_RS11780 (LVE68_11780) - 2733978..2734316 (+) 339 WP_067084464.1 P-II family nitrogen regulator -
  LVE68_RS11785 (LVE68_11785) - 2734678..2734905 (+) 228 WP_232940595.1 hypothetical protein -
  LVE68_RS11790 (LVE68_11790) - 2735071..2736963 (+) 1893 WP_232940596.1 DUF3604 domain-containing protein -
  LVE68_RS11795 (LVE68_11795) xerC 2736969..2737865 (-) 897 WP_305080427.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52651.16 Da        Isoelectric Point: 7.9846

>NTDB_id=639180 LVE68_RS11755 WP_232940590.1 2729152..2730648(-) (comM) [Microbulbifer sp. YPW16]
MSLSVTHTRAQLGVSAPLVTVETHLANGLPAFNIVGLPEAAVRESRDRVRSALVNSHFEFPQRRITVNLAPADLPKEGGR
YDLAIALGILAASGQVPVESLAGAEFIGELALTGDLREVPGALPAAIACADAGHRLVVPRASGPAAALADGEILVAENLL
QVCAHLHRRESLPAAQPPPAPARPQVADLADVRGQLRARRALEIAAAGGHNLLFYGPPGTGKTMLASRLPGILPALGQRE
QLEVAAVYSSAGLDFPGQRPFRAPHHSASPTALVGGGSNPRPGEISLAHRGILFLDELPEFPRHALEILREPLESGEVRI
ARARASVAFPAGFQLVAAMNPCPCGYLGEPRCRCTPDQVQRYRAKLSGPLLDRIDMHVEVAAMTAGQLQDAPTGEASAVV
QERVVDARIRQQQRQATINAELRGNALEQQCSLGGPEQELLRRSVDQLGLSARSYHRVLRVARTIADLAGAASIGSGHIA
EALAYRNLDRRQPIGAGA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=639180 LVE68_RS11755 WP_232940590.1 2729152..2730648(-) (comM) [Microbulbifer sp. YPW16]
GTGAGCCTATCCGTTACCCACACCCGCGCCCAGCTGGGGGTCTCTGCCCCCCTGGTCACAGTCGAGACCCACCTGGCCAA
CGGCCTGCCCGCCTTCAATATTGTCGGCCTGCCCGAGGCCGCCGTGCGCGAGAGCCGCGACCGGGTGCGCAGTGCCCTGG
TGAACAGCCATTTCGAATTCCCCCAGCGGCGCATTACCGTCAACCTGGCCCCCGCCGACCTGCCCAAGGAGGGCGGGCGC
TACGACCTGGCGATTGCACTGGGCATCCTCGCCGCCTCCGGGCAGGTACCGGTGGAATCCCTGGCCGGGGCCGAGTTTAT
CGGCGAGCTGGCGCTCACCGGTGACCTGCGGGAAGTGCCCGGCGCCCTGCCGGCAGCCATTGCCTGTGCCGATGCCGGGC
ACCGCCTGGTGGTGCCACGGGCATCCGGCCCCGCGGCCGCGCTGGCAGACGGGGAGATACTGGTGGCGGAGAACCTGCTG
CAGGTCTGCGCCCACCTGCACCGGCGCGAGTCACTGCCGGCAGCGCAACCCCCGCCGGCGCCGGCCAGGCCGCAGGTAGC
GGACCTGGCGGACGTGCGCGGCCAGCTGCGCGCCCGCCGGGCCCTGGAGATCGCCGCCGCCGGCGGTCACAACCTGCTGT
TTTACGGCCCCCCGGGGACCGGCAAGACCATGCTGGCCAGCCGGCTGCCGGGGATACTGCCGGCGCTGGGCCAGCGGGAG
CAGCTGGAGGTGGCCGCGGTTTACTCCAGCGCCGGCCTGGACTTCCCCGGCCAGCGGCCCTTCCGTGCGCCCCACCACAG
TGCCTCGCCGACAGCACTGGTGGGTGGCGGCAGCAATCCCCGCCCCGGGGAAATCTCACTGGCCCACCGCGGGATCCTGT
TTCTCGATGAATTGCCGGAGTTTCCCCGTCACGCCCTGGAGATCCTGCGCGAACCGCTGGAAAGCGGCGAGGTGCGCATT
GCCCGCGCCCGCGCCAGCGTCGCCTTCCCCGCCGGCTTCCAGCTGGTTGCGGCAATGAACCCGTGCCCCTGCGGCTACCT
GGGCGAGCCGCGCTGCCGCTGCACCCCCGACCAGGTACAGCGCTACCGCGCCAAGCTGTCCGGACCATTGCTGGACCGGA
TTGATATGCACGTGGAGGTCGCCGCGATGACTGCCGGCCAGCTGCAGGATGCGCCCACCGGGGAGGCCTCGGCGGTGGTG
CAGGAGCGGGTCGTCGATGCCCGTATCCGGCAACAGCAACGACAGGCTACAATCAACGCGGAGCTCCGGGGCAACGCCCT
GGAACAGCAGTGCAGTCTTGGCGGCCCTGAGCAGGAGCTGCTGCGCCGGTCGGTGGACCAGCTGGGCCTTTCGGCCCGCA
GCTACCACCGGGTGTTGCGGGTAGCGCGAACCATTGCCGATCTTGCAGGCGCAGCATCCATCGGCAGCGGGCATATCGCC
GAGGCACTGGCTTATCGCAACCTGGACCGCCGGCAGCCCATTGGCGCCGGGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(394-486)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.728

99.799

0.546
  comM Vibrio campbellii strain DS40M4

54.125

99.799

0.54
  comM Glaesserella parasuis strain SC1401

53.094

100

0.534
  comM Haemophilus influenzae Rd KW20

52.295

100

0.526
  comM Legionella pneumophila str. Paris

51.008

99.598

0.508
  comM Legionella pneumophila strain ERS1305867

51.008

99.598

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.382

100

0.454