Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LVB87_RS05310 Genome accession   NZ_CP089925
Coordinates   1126333..1127829 (-) Length   498 a.a.
NCBI ID   WP_232899866.1    Uniprot ID   -
Organism   Lysobacter sp. KIS68-7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1121333..1132829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVB87_RS05275 (LVB87_05275) - 1121595..1122593 (+) 999 WP_232900471.1 ribonucleotide-diphosphate reductase subunit beta -
  LVB87_RS05280 (LVB87_05280) - 1122590..1122880 (-) 291 WP_232899860.1 hypothetical protein -
  LVB87_RS05285 (LVB87_05285) - 1122873..1123352 (-) 480 WP_232899861.1 RNA polymerase sigma factor -
  LVB87_RS05290 (LVB87_05290) - 1123356..1123814 (-) 459 WP_232899862.1 hypothetical protein -
  LVB87_RS05295 (LVB87_05295) - 1123801..1124793 (-) 993 WP_232899863.1 DUF4350 domain-containing protein -
  LVB87_RS05300 (LVB87_05300) - 1124926..1125777 (+) 852 WP_232899864.1 DUF5694 domain-containing protein -
  LVB87_RS05305 (LVB87_05305) - 1125779..1126279 (-) 501 WP_232899865.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  LVB87_RS05310 (LVB87_05310) comM 1126333..1127829 (-) 1497 WP_232899866.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LVB87_RS05315 (LVB87_05315) - 1127845..1128111 (-) 267 WP_232900473.1 accessory factor UbiK family protein -
  LVB87_RS05320 (LVB87_05320) - 1128283..1128621 (+) 339 WP_232899867.1 P-II family nitrogen regulator -
  LVB87_RS05325 (LVB87_05325) - 1128628..1129473 (-) 846 WP_232899868.1 DUF3667 domain-containing protein -
  LVB87_RS05330 (LVB87_05330) speE 1129504..1130352 (-) 849 WP_232899869.1 polyamine aminopropyltransferase -
  LVB87_RS05335 (LVB87_05335) speA 1130477..1132363 (+) 1887 WP_232899870.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53137.77 Da        Isoelectric Point: 7.9067

>NTDB_id=639131 LVB87_RS05310 WP_232899866.1 1126333..1127829(-) (comM) [Lysobacter sp. KIS68-7]
MGLSLVHSRARVGARAPAVQVEVHVGGGLPTMSIVGLPQGAVREAKDRVRAAIHCAQFEFPNGRITVNLAPADLPKSGGR
FDLPIALGVLAASGQLPNEALRDVEFLGELGLTGELRAVDGVLPAAMAARETGRRLIVPLANGAEAALVESADVRVARTL
SEVCAALVNAKELPSAERIDARAAVVPDLLDVRGQAQARRALEVAAAGQHHVLFVGTPGCGKTLLASRLPGLLPEASAAE
ALESASIASVSGRGFDPATWRVRPFRSPHHEASSAALVGGGPGARPGEISLAHNGVLFLDELPEWNRHALQMLREPLESG
IATISRASLRCDYPARFQLVAAMNPCPCGWAGDISDRCRCTPQQIDTYLARISGPLLDRIDLHVDVPRLPPSALRDDAAR
GEPTAVVRERVVAARERQLARAGRSNAHLDTQGTEATCRLEHDDRLLLERAIETLHLSARSLHRILRVARTIADLAASER
IETAHLTEAIGYRRLDRR

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=639131 LVB87_RS05310 WP_232899866.1 1126333..1127829(-) (comM) [Lysobacter sp. KIS68-7]
ATGGGGTTGTCGCTCGTGCACAGCCGTGCACGCGTGGGTGCGCGCGCGCCTGCGGTCCAGGTGGAAGTGCATGTGGGCGG
CGGCTTGCCGACGATGTCGATCGTCGGGCTGCCGCAGGGCGCGGTGCGCGAAGCGAAGGACCGTGTGCGGGCTGCGATCC
ATTGCGCGCAGTTCGAATTTCCCAATGGGCGCATCACCGTCAATCTTGCGCCGGCGGATTTGCCGAAGAGTGGTGGGCGC
TTCGATCTGCCCATCGCGCTGGGCGTGCTGGCGGCGAGCGGGCAATTGCCGAACGAGGCACTGCGCGATGTCGAGTTCCT
GGGCGAACTCGGGCTGACCGGCGAACTGCGGGCCGTCGATGGCGTGTTGCCGGCTGCGATGGCCGCGCGCGAAACAGGGC
GACGGTTGATCGTGCCCCTCGCCAACGGCGCGGAAGCGGCGCTCGTGGAGTCGGCCGACGTCCGCGTGGCGCGCACGTTG
TCGGAAGTCTGTGCCGCGCTGGTGAATGCGAAAGAATTGCCGAGCGCCGAACGCATCGATGCGCGCGCCGCGGTCGTGCC
GGACTTGCTGGACGTGCGCGGCCAGGCGCAGGCGCGGCGCGCTTTGGAAGTTGCGGCCGCGGGTCAACATCACGTGTTGT
TCGTCGGCACGCCCGGATGCGGCAAGACCTTGCTGGCCTCGCGACTCCCGGGCCTGTTGCCCGAAGCGAGCGCGGCCGAA
GCGCTGGAGTCGGCGTCGATCGCCTCCGTCAGCGGTCGCGGATTCGACCCGGCGACCTGGCGCGTTCGCCCGTTCCGATC
GCCGCACCACGAGGCGAGTTCGGCGGCGCTGGTCGGTGGCGGGCCGGGGGCGCGTCCCGGTGAAATCTCGCTCGCGCACA
ACGGCGTGCTGTTCCTCGACGAGCTGCCTGAGTGGAACCGCCACGCGCTGCAGATGCTGCGCGAGCCGCTGGAATCGGGC
ATCGCGACGATTTCGCGCGCGTCGCTGCGTTGCGACTACCCCGCGCGCTTCCAGCTGGTCGCCGCAATGAATCCCTGCCC
TTGCGGCTGGGCCGGCGACATCTCGGATCGCTGTCGGTGCACGCCGCAGCAGATCGATACCTATCTTGCGCGGATCTCCG
GTCCGCTGCTCGATCGCATCGACCTGCACGTCGACGTGCCGCGGCTGCCACCGAGTGCCTTGCGCGACGATGCGGCGCGC
GGCGAGCCCACGGCCGTGGTGCGCGAGCGCGTCGTTGCGGCGCGCGAACGGCAACTCGCGCGCGCCGGCCGGTCGAATGC
GCACCTGGACACGCAAGGCACCGAAGCCACGTGCCGCCTCGAACACGACGACCGGCTGCTTCTGGAGCGCGCAATCGAAA
CGCTGCACCTCTCCGCGCGGTCGCTGCACCGCATCCTGCGTGTCGCGCGCACCATCGCGGACCTGGCGGCCAGCGAGCGG
ATCGAAACGGCGCACCTCACGGAAGCCATCGGCTACCGGCGGCTGGATCGTCGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.781

100

0.552
  comM Vibrio cholerae strain A1552

54.274

100

0.548
  comM Haemophilus influenzae Rd KW20

52.778

100

0.534
  comM Glaesserella parasuis strain SC1401

52.286

100

0.528
  comM Legionella pneumophila str. Paris

48.016

100

0.486
  comM Legionella pneumophila strain ERS1305867

48.016

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.651

100

0.442