Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LVB77_RS02720 Genome accession   NZ_CP089924
Coordinates   656900..658414 (-) Length   504 a.a.
NCBI ID   WP_232908692.1    Uniprot ID   -
Organism   Lysobacter sp. 5GHs7-4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 651900..663414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVB77_RS02685 (LVB77_02685) - 652379..652705 (-) 327 WP_232908685.1 NHLP-related RiPP peptide -
  LVB77_RS02690 (LVB77_02690) - 652818..653981 (+) 1164 WP_232908686.1 putative peptide maturation dehydrogenase -
  LVB77_RS02695 (LVB77_02695) - 654325..654771 (+) 447 WP_232908687.1 hypothetical protein -
  LVB77_RS02700 (LVB77_02700) - 654793..655032 (+) 240 WP_232908688.1 hypothetical protein -
  LVB77_RS02705 (LVB77_02705) - 655069..655536 (+) 468 WP_232908689.1 hypothetical protein -
  LVB77_RS02710 (LVB77_02710) - 655680..656138 (+) 459 WP_232908690.1 hypothetical protein -
  LVB77_RS02715 (LVB77_02715) - 656341..656796 (+) 456 WP_232908691.1 hypothetical protein -
  LVB77_RS02720 (LVB77_02720) comM 656900..658414 (-) 1515 WP_232908692.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LVB77_RS02725 (LVB77_02725) - 658424..658690 (-) 267 WP_056176850.1 accessory factor UbiK family protein -
  LVB77_RS02730 (LVB77_02730) - 658966..659304 (+) 339 WP_056176848.1 P-II family nitrogen regulator -
  LVB77_RS02735 (LVB77_02735) - 660240..660386 (+) 147 WP_232908693.1 class III lanthipeptide -
  LVB77_RS02740 (LVB77_02740) lanKC 660484..663156 (+) 2673 WP_232908694.1 class III lanthionine synthetase LanKC -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53626.43 Da        Isoelectric Point: 8.4121

>NTDB_id=639101 LVB77_RS02720 WP_232908692.1 656900..658414(-) (comM) [Lysobacter sp. 5GHs7-4]
MNLAIAHSRARTGVRAPAVRVEVHLAGGLPAMSIVGLPEAAVREAKDRVRAAIQCAQFEFPARRITVNLAPADLPKDGGR
YDLAIALGILAASGQIPLEALGEYEFLGELALTGELRAIDGVLPAALAAADAGRKLVVPADNGAEAALASRVEAMTARTL
LEVCAMLSARKALPAAVAVPSVRTPGPDLADVRGQNQARRALEIAAAGGHHLLLIGPPGSGKTLLATRLSGLLPEADEDE
ALEAAAIASVSGRGLDPARWRERPFRSPHHTASAVALVGGGTEPRPGEISLAHQGVLFLDELPEWDRRALEVLREPLESG
VVTISRAARSSEFPARFQLIAAMNPCPCGWAGDRSGRCHCGIDAIRRYRARVSGPMLDRIDLHIEVPRLMPTELRTDAPP
NETSAQVRERVAQARELQRSRAGKVNAQMTQAETSATCRLEDRDHALLERAVETLQLSARSTHRILRVARTIADLAGSPR
ILSTHLSEAIGYRRADRGAAMQAA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=639101 LVB77_RS02720 WP_232908692.1 656900..658414(-) (comM) [Lysobacter sp. 5GHs7-4]
ATGAATCTGGCGATCGCGCACAGCCGTGCGCGTACGGGCGTGCGCGCGCCCGCGGTTCGGGTCGAAGTCCATCTGGCCGG
CGGCCTACCGGCCATGTCCATCGTCGGCCTGCCCGAGGCCGCCGTGCGCGAGGCCAAGGACCGCGTGCGCGCGGCGATCC
AATGCGCGCAGTTCGAGTTCCCGGCGCGGCGCATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TACGACCTCGCGATCGCACTGGGCATCCTCGCCGCCAGCGGGCAAATTCCGCTGGAGGCGCTGGGCGAGTACGAATTCCT
GGGCGAGCTCGCGCTCACCGGCGAGCTGCGCGCGATCGACGGCGTGCTGCCCGCCGCCCTGGCCGCGGCCGACGCCGGCC
GCAAGCTGGTGGTGCCCGCCGACAACGGCGCCGAGGCCGCGCTGGCCAGCCGCGTCGAGGCCATGACCGCGCGCACCCTG
CTGGAAGTCTGCGCCATGCTGTCGGCGCGCAAGGCGCTGCCCGCCGCGGTCGCCGTGCCCAGCGTCCGCACGCCGGGGCC
GGACTTGGCCGACGTGCGCGGCCAGAACCAAGCGCGCCGCGCGCTGGAGATCGCCGCCGCCGGCGGTCACCACCTGCTGT
TGATCGGCCCGCCCGGCAGCGGCAAGACTCTGCTGGCCACGCGGCTGTCCGGCCTGCTGCCGGAAGCCGACGAAGACGAA
GCCCTTGAGGCCGCCGCGATCGCCTCGGTCAGCGGCCGCGGACTGGATCCGGCGCGCTGGCGCGAACGCCCGTTCCGCTC
GCCGCACCACACCGCCAGCGCGGTCGCCCTGGTCGGCGGCGGCACCGAACCGCGTCCCGGCGAAATCTCGCTCGCGCATC
AGGGCGTGCTGTTCCTGGACGAGTTGCCCGAATGGGACCGGCGCGCCCTGGAAGTGCTGCGCGAACCGCTGGAGTCGGGC
GTGGTCACCATCTCGCGTGCCGCGCGCAGCAGCGAGTTCCCGGCGCGGTTCCAGTTGATCGCGGCCATGAATCCCTGCCC
CTGCGGCTGGGCCGGCGACCGCAGCGGCCGCTGCCATTGTGGCATCGACGCGATCCGCCGCTACCGCGCGCGCGTGTCCG
GCCCGATGCTGGACCGCATCGACCTGCACATCGAAGTGCCGCGGCTGATGCCCACCGAGCTGCGCACCGACGCGCCGCCC
AACGAAACCAGCGCGCAAGTGCGCGAGCGCGTGGCACAGGCGCGCGAGTTGCAGCGCAGCCGCGCCGGCAAGGTCAATGC
GCAGATGACCCAGGCCGAGACCTCGGCGACCTGCCGCCTCGAAGATCGCGACCATGCCCTGCTGGAGCGCGCGGTGGAAA
CCCTGCAGCTGTCGGCACGCTCCACCCATCGCATCCTGCGCGTCGCGCGCACCATCGCCGACCTGGCCGGCAGTCCGCGC
ATCCTCAGCACGCACCTGAGCGAGGCGATCGGCTATCGGCGTGCGGACAGAGGCGCGGCGATGCAGGCGGCGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55

99.206

0.546
  comM Vibrio cholerae strain A1552

54.91

99.008

0.544
  comM Glaesserella parasuis strain SC1401

54.274

99.802

0.542
  comM Haemophilus influenzae Rd KW20

53.908

99.008

0.534
  comM Legionella pneumophila str. Paris

50.503

98.611

0.498
  comM Legionella pneumophila strain ERS1305867

50.503

98.611

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.562

100

0.458