Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   X636_RS02875 Genome accession   NC_023018
Coordinates   614561..615070 (+) Length   169 a.a.
NCBI ID   WP_023873012.1    Uniprot ID   -
Organism   Pandoraea pnomenusa     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 609561..620070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X636_RS02865 (X636_13495) uvrA 609990..612854 (-) 2865 WP_023873011.1 excinuclease ABC subunit UvrA -
  X636_RS02870 (X636_13500) - 613367..614530 (+) 1164 WP_023597714.1 MFS transporter -
  X636_RS02875 (X636_13505) ssb 614561..615070 (+) 510 WP_023873012.1 single-stranded DNA-binding protein Machinery gene
  X636_RS02880 (X636_13510) - 615381..615710 (-) 330 WP_023873013.1 DUF4148 domain-containing protein -
  X636_RS02885 (X636_13515) - 616009..619221 (+) 3213 WP_023873015.1 efflux RND transporter permease subunit -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 17715.44 Da        Isoelectric Point: 5.3177

>NTDB_id=63900 X636_RS02875 WP_023873012.1 614561..615070(+) (ssb) [Pandoraea pnomenusa]
MASVNKVILVGNLGADPEVRYMPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYQAQDGTDRYSTEIVADQMQMLGGRSGGGEGGGGGGYSRGGGDEGGGGGGGYSRGGGGGGGGRQQAPAKPSGGF
DDMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=63900 X636_RS02875 WP_023873012.1 614561..615070(+) (ssb) [Pandoraea pnomenusa]
ATGGCATCAGTCAACAAAGTGATCCTGGTCGGCAACCTTGGCGCCGACCCCGAAGTCCGCTACATGCCGAGCGGCGATGC
GGTCGCGAACATCCGCCTGGCCACGACCGACCGTTACAAGGACAAGCAGTCCGGCGAGTTCAAGGAAATGACGGAATGGC
ACCGCGTGTCGTTCTTCGGCCGGCTCGCGGAAATCGTCAATGAGTACCTGAAGAAGGGCTCGTCGGTGTATATCGAAGGC
CGTATCCGTACGCGCAAGTACCAGGCGCAGGACGGCACGGACCGTTACAGCACGGAAATCGTGGCGGACCAGATGCAGAT
GCTGGGTGGCCGCAGCGGCGGCGGTGAAGGTGGCGGCGGTGGCGGCTACTCGCGCGGTGGTGGCGACGAGGGCGGCGGCG
GTGGCGGTGGCTATTCGCGTGGCGGTGGTGGTGGTGGCGGTGGCCGTCAGCAGGCGCCGGCCAAGCCGTCCGGCGGTTTC
GACGACATGGACGACGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.958

100

0.556
  ssb Glaesserella parasuis strain SC1401

48.889

100

0.521
  ssb Neisseria meningitidis MC58

46.328

100

0.485
  ssb Neisseria gonorrhoeae MS11

46.328

100

0.485
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.64

100

0.396

Multiple sequence alignment