Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   X636_RS02265 Genome accession   NC_023018
Coordinates   491787..493355 (-) Length   522 a.a.
NCBI ID   WP_023872949.1    Uniprot ID   -
Organism   Pandoraea pnomenusa     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 486787..498355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X636_RS02245 (X636_12860) - 488236..489588 (+) 1353 WP_023872945.1 sigma-54 dependent transcriptional regulator -
  X636_RS02250 (X636_12865) - 489662..490186 (-) 525 WP_023597837.1 TlpA disulfide reductase family protein -
  X636_RS02255 (X636_12870) - 490250..490927 (-) 678 WP_023872947.1 hypothetical protein -
  X636_RS02260 (X636_12875) - 491215..491754 (+) 540 WP_023597835.1 hypothetical protein -
  X636_RS02265 (X636_12880) comM 491787..493355 (-) 1569 WP_023872949.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  X636_RS02270 (X636_12885) - 493666..493914 (-) 249 WP_024788671.1 accessory factor UbiK family protein -
  X636_RS02275 (X636_12890) - 494323..495150 (+) 828 WP_023872951.1 TorF family putative porin -
  X636_RS02280 (X636_12895) - 495164..495502 (+) 339 WP_010804740.1 P-II family nitrogen regulator -
  X636_RS02285 (X636_12900) amt 495528..497063 (+) 1536 WP_023597831.1 ammonium transporter -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 55274.04 Da        Isoelectric Point: 7.9027

>NTDB_id=63898 X636_RS02265 WP_023872949.1 491787..493355(-) (comM) [Pandoraea pnomenusa]
MTLAIVSSRAITGMAARPVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPTRRITVNLAPADLPKASGC
FDLPIALGILAASGQLPEAGLRTHEFAGELSLTGELRRVRGGLAMAGAIAAEASTRALVLPVDSAQEAALVEDATVFGAR
TLLDVCAHLAEPDVATPLPRATVPGGSMRQDGAALSPCTGERPIPTDPVADAPDLSDIKGQAPAKRALEVAAAGGHHILF
YGPPGTGKSMLATRLAGLLPALSKAHAVESATLASLSAQGFDLRHWGRRPVRTPHHTASAAALVGGGSTPRPGEISLAHR
GVLFLDELPEFQRRVLEVLREPLEQGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPSRRCRCTADAVARYRNRLSG
PLLDRIDLHVEVPALSAETFAAQADGERSEVVASRVRQAREWQLSRQGQLNCALSGRALEMQCALSRDAEAVLHRAVAQH
HWSARTYHRVLRVARTVADLAQCQAIDAHHVAEAVQYREAPS

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=63898 X636_RS02265 WP_023872949.1 491787..493355(-) (comM) [Pandoraea pnomenusa]
ATGACATTGGCCATCGTGAGCAGCCGGGCGATTACGGGCATGGCAGCGCGCCCGGTGACGGTCGAAGTCCATCTTGCGAA
CGGGCTCCCTGGCCTGTCGCTGGTGGGTCTGCCCGACACCGAAGTCAAGGAAAGCCGGGAGCGGGTACGCTCGGCATTGC
AGAACAGCCGGTTCGAATTTCCGACGCGGCGCATCACGGTCAATCTGGCGCCCGCTGACCTGCCGAAGGCATCCGGTTGT
TTCGACCTGCCGATTGCGCTCGGCATTCTCGCGGCCAGTGGCCAGTTGCCCGAGGCGGGACTGCGGACGCACGAGTTCGC
GGGCGAATTGTCGCTCACGGGCGAGCTGCGCCGCGTGCGTGGGGGGCTCGCCATGGCGGGCGCCATCGCCGCCGAGGCGT
CGACGCGCGCGCTGGTGCTTCCCGTGGACAGCGCTCAGGAGGCGGCCCTGGTCGAAGACGCCACCGTCTTCGGCGCACGC
ACGTTGCTCGATGTCTGTGCGCATCTTGCCGAACCCGACGTTGCGACGCCGTTGCCGCGTGCCACCGTGCCGGGTGGGTC
GATGCGGCAGGACGGCGCAGCGTTGTCGCCCTGCACCGGCGAGCGGCCGATCCCCACGGATCCGGTGGCCGATGCGCCCG
ATCTGTCGGACATCAAGGGGCAGGCCCCGGCTAAACGGGCACTGGAAGTGGCGGCCGCGGGCGGACATCACATTCTCTTC
TATGGGCCGCCGGGCACGGGCAAGTCGATGCTGGCGACGCGGCTCGCCGGTCTGCTTCCCGCGTTAAGCAAGGCACATGC
CGTGGAATCCGCCACGCTCGCGAGCCTCAGCGCGCAGGGGTTCGACTTGCGCCACTGGGGACGCCGCCCCGTTCGCACCC
CGCATCACACGGCATCGGCTGCCGCACTCGTGGGCGGCGGCAGCACGCCGCGCCCTGGCGAAATCAGCCTGGCCCATCGC
GGGGTGCTCTTTCTCGACGAATTGCCCGAATTCCAGCGGCGTGTGCTCGAAGTTCTGCGCGAACCACTCGAGCAGGGGCA
TGTGACCATCTCCCGTGCCGGCGGACATGCCACGTTCCCCGCCGCGTTCCAGTTGGTCGCCGCAATGAACCCGTGTCCCT
GCGGCGATCTGGGGCACCCGTCGCGACGCTGTCGCTGCACGGCCGACGCGGTGGCGCGCTACCGCAACCGGCTCTCAGGG
CCGCTGCTCGATCGCATCGACCTGCACGTGGAAGTGCCGGCGCTGAGCGCCGAGACGTTCGCCGCCCAGGCCGACGGCGA
GCGGAGTGAGGTTGTCGCATCGCGCGTCAGGCAGGCGCGGGAGTGGCAGTTGTCGCGTCAGGGGCAATTGAACTGCGCGC
TGTCCGGACGGGCCCTGGAGATGCAATGCGCATTGTCGCGCGACGCCGAAGCGGTCCTGCATCGGGCCGTGGCGCAGCAC
CACTGGTCGGCTCGCACCTATCATCGCGTGCTGCGTGTGGCGCGCACCGTCGCGGATCTTGCGCAATGCCAAGCCATCGA
TGCCCATCACGTCGCCGAAGCTGTGCAATATCGAGAGGCCCCCAGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(426-518)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(214-418)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.252

99.425

0.51
  comM Vibrio campbellii strain DS40M4

49.904

99.425

0.496
  comM Haemophilus influenzae Rd KW20

49.133

99.425

0.489
  comM Glaesserella parasuis strain SC1401

48.846

99.617

0.487
  comM Legionella pneumophila str. Paris

47.025

99.808

0.469
  comM Legionella pneumophila strain ERS1305867

47.025

99.808

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.994

99.808

0.429

Multiple sequence alignment