Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   EIH17_RS00920 Genome accession   NZ_CP089782
Coordinates   171318..172457 (+) Length   379 a.a.
NCBI ID   WP_232683781.1    Uniprot ID   -
Organism   Leuconostoc mesenteroides strain KNU-2     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 166318..177457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIH17_RS00900 yycF 166475..167182 (+) 708 WP_010281559.1 response regulator YycF -
  EIH17_RS00905 walK 167250..169115 (+) 1866 WP_041775208.1 cell wall metabolism sensor histidine kinase WalK -
  EIH17_RS00910 - 169105..170397 (+) 1293 WP_232683780.1 hypothetical protein -
  EIH17_RS00915 yycI 170454..171257 (+) 804 WP_010289058.1 two-component system regulatory protein YycI -
  EIH17_RS00920 htrA 171318..172457 (+) 1140 WP_232683781.1 S1C family serine protease Regulator
  EIH17_RS00925 rlmH 173088..173567 (+) 480 WP_115231359.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  EIH17_RS00930 - 173661..175826 (+) 2166 WP_179876308.1 YhgE/Pip domain-containing protein -
  EIH17_RS00935 - 175880..176332 (+) 453 WP_011680485.1 Rrf2 family transcriptional regulator -
  EIH17_RS00940 - 176417..177082 (-) 666 WP_010285559.1 NAD(P)H-hydrate epimerase -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 39192.45 Da        Isoelectric Point: 9.7777

>NTDB_id=638621 EIH17_RS00920 WP_232683781.1 171318..172457(+) (htrA) [Leuconostoc mesenteroides strain KNU-2]
MVQSALTKTLLTGVIAGVVGGGAILYGQQGVQLLQNQNQKVSTTATSTKTIAKNATATSAYNKVSDAVVSVLNFTKSSQG
SYQESSEGSGVIYKKTDGSAFIVTNNHVITGAAKIQVMLHSGKKVTATLVGKDAMTDLAVLKIDGTDVTTTAQFGDSSKI
TVGENVLAIGSPLGSEYASSVTQGIISAKKRLVEATSENGQNYGGSTVIQTDAAINPGNSGGPLINFAGQVIGINSMKLS
TSSSGTSVEGIGFAIPSDQVVDIVNKLVKDGKVTRPAIGISLINLSEVTASEQKSTLKIPDSVTGGVVVMSLTNNGPADK
AGLKKYDVIVGINGKKVSSQADLREELYKHSLGDTITLTYYHQDTKQTVKVKLTQKLAS

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=638621 EIH17_RS00920 WP_232683781.1 171318..172457(+) (htrA) [Leuconostoc mesenteroides strain KNU-2]
ATGGTACAATCAGCATTAACAAAAACGTTGTTAACTGGCGTCATTGCTGGTGTTGTTGGTGGAGGAGCAATTTTGTATGG
GCAGCAGGGTGTACAATTGTTACAAAATCAAAATCAAAAAGTGAGTACGACAGCAACAAGTACAAAAACGATTGCCAAGA
ATGCAACTGCTACATCAGCTTATAATAAGGTATCAGATGCAGTTGTATCTGTATTGAACTTTACTAAATCCAGTCAAGGT
AGTTATCAAGAATCGTCAGAAGGTTCTGGCGTGATCTATAAAAAAACGGATGGATCGGCATTTATTGTAACGAATAATCA
CGTAATCACTGGAGCGGCTAAAATTCAAGTTATGCTGCACAGTGGGAAGAAAGTGACCGCTACATTAGTCGGCAAAGATG
CGATGACTGACTTAGCTGTTCTGAAAATCGACGGCACAGACGTTACAACAACTGCACAATTTGGCGATTCAAGTAAAATA
ACTGTTGGTGAAAACGTCTTGGCAATTGGTTCGCCGCTGGGATCTGAGTATGCTTCGTCAGTGACGCAAGGCATCATTTC
GGCCAAGAAAAGGTTAGTTGAGGCAACATCTGAAAATGGTCAAAATTATGGTGGATCCACGGTTATTCAGACGGATGCTG
CTATTAATCCTGGTAACTCAGGTGGACCATTAATCAACTTTGCAGGACAAGTTATTGGTATTAACTCAATGAAGTTGTCA
ACATCTTCTTCTGGAACGAGCGTTGAGGGGATTGGTTTTGCAATTCCTTCTGATCAAGTCGTTGACATTGTTAACAAATT
AGTCAAAGATGGTAAAGTCACACGACCAGCAATTGGCATTAGTTTGATTAATTTGTCAGAAGTAACAGCTTCTGAGCAAA
AATCAACATTGAAAATTCCAGATAGCGTTACTGGTGGTGTTGTTGTAATGAGTTTGACTAACAATGGCCCAGCAGATAAA
GCTGGATTGAAGAAGTACGACGTTATTGTTGGCATTAATGGTAAAAAGGTCAGCTCACAGGCTGATCTGCGAGAAGAACT
CTACAAGCATTCGCTTGGGGACACAATAACATTGACTTATTATCATCAGGATACTAAGCAAACCGTCAAGGTTAAATTAA
CACAGAAATTAGCAAGCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

52.394

93.668

0.491

  htrA Streptococcus gordonii str. Challis substr. CH1

48.285

100

0.483

  htrA Streptococcus pneumoniae D39

52.924

90.237

0.478

  htrA Streptococcus pneumoniae TIGR4

52.924

90.237

0.478

  htrA Streptococcus pneumoniae R6

52.924

90.237

0.478

  htrA Streptococcus pneumoniae Rx1

52.924

90.237

0.478

  htrA Streptococcus mutans UA159

52.353

89.71

0.47