Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUM42_RS01910 Genome accession   NZ_CP089603
Coordinates   402682..403215 (+) Length   177 a.a.
NCBI ID   WP_014205867.1    Uniprot ID   A0A0Q2XSJ5
Organism   Vibrio furnissii strain VFN3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 397682..408215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUM42_RS01895 (LUM42_01895) uvrA 397790..400612 (-) 2823 WP_004724090.1 excinuclease ABC subunit UvrA -
  LUM42_RS01900 (LUM42_01900) galU 400750..401619 (-) 870 WP_004724089.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LUM42_RS01905 (LUM42_01905) qstR 401749..402399 (-) 651 WP_232658403.1 LuxR C-terminal-related transcriptional regulator Regulator
  LUM42_RS01910 (LUM42_01910) ssb 402682..403215 (+) 534 WP_014205867.1 single-stranded DNA-binding protein Machinery gene
  LUM42_RS01915 (LUM42_01915) csrD 403351..405345 (+) 1995 WP_232658404.1 RNase E specificity factor CsrD -
  LUM42_RS01920 (LUM42_01920) - 405353..406798 (+) 1446 WP_154180670.1 MSHA biogenesis protein MshI -
  LUM42_RS01925 (LUM42_01925) gspM 406798..407448 (+) 651 WP_004724077.1 type II secretion system protein GspM -
  LUM42_RS01930 (LUM42_01930) - 407441..407752 (+) 312 WP_004724074.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19671.81 Da        Isoelectric Point: 5.7626

>NTDB_id=638338 LUM42_RS01910 WP_014205867.1 402682..403215(+) (ssb) [Vibrio furnissii strain VFN3]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGTMQMLGGRQQGGMPAQGGGMNQQQQQGGWGQPQQPAMQQHKPMQQQAPQQS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=638338 LUM42_RS01910 WP_014205867.1 402682..403215(+) (ssb) [Vibrio furnissii strain VFN3]
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACCTTGGTAGTGATCCGGAAGTTCGCTACATGCCAAGTGG
TGGTGCAGTCGCAAACATCACTGTAGCCACGTCAGAAACATGGCGTGATAAAGCAACTGGCGAACAGCGCGAGAAAACAG
AGTGGCACCGTGTTGCTCTGTACGGAAAACTGGCGGAAGTCGCGGGTGAATATCTACGCAAAGGTTCTCAGGTCTACATC
GAAGGTCAACTGCAAACACGTAAGTGGCAGGACCAAAGTGGTCAAGACCGTTACTCTACCGAAGTGGTTGTGCAAGGTTA
CAACGGCACAATGCAGATGTTGGGTGGCCGTCAACAAGGCGGCATGCCAGCACAGGGTGGCGGCATGAACCAACAGCAAC
AACAAGGCGGTTGGGGTCAGCCTCAGCAACCTGCGATGCAGCAGCATAAACCGATGCAGCAGCAAGCACCTCAGCAATCT
CAGCCTCAGTACAATGAACCGCCAATGGATTTTGATGACGATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2XSJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

90.503

100

0.915
  ssb Glaesserella parasuis strain SC1401

54.098

100

0.559
  ssb Neisseria meningitidis MC58

48.023

100

0.48
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.48