Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   LUM42_RS01905 Genome accession   NZ_CP089603
Coordinates   401749..402399 (-) Length   216 a.a.
NCBI ID   WP_232658403.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFN3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 396749..407399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUM42_RS01895 (LUM42_01895) uvrA 397790..400612 (-) 2823 WP_004724090.1 excinuclease ABC subunit UvrA -
  LUM42_RS01900 (LUM42_01900) galU 400750..401619 (-) 870 WP_004724089.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LUM42_RS01905 (LUM42_01905) qstR 401749..402399 (-) 651 WP_232658403.1 LuxR C-terminal-related transcriptional regulator Regulator
  LUM42_RS01910 (LUM42_01910) ssb 402682..403215 (+) 534 WP_014205867.1 single-stranded DNA-binding protein Machinery gene
  LUM42_RS01915 (LUM42_01915) csrD 403351..405345 (+) 1995 WP_232658404.1 RNase E specificity factor CsrD -
  LUM42_RS01920 (LUM42_01920) - 405353..406798 (+) 1446 WP_154180670.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24789.53 Da        Isoelectric Point: 8.7565

>NTDB_id=638337 LUM42_RS01905 WP_232658403.1 401749..402399(-) (qstR) [Vibrio furnissii strain VFN3]
MQRANYARTIYYLCLDATLPPPPPLGDALTRLALPVPQIEPEQLLQAYQADKHKILLFNYGEHDAIRQRLGPLPITSPHL
ETILFGVEKRLRTEELLTFGNLKGLFYQDDAPPSIAQGLAEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRE
LQILRSLQTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAITWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=638337 LUM42_RS01905 WP_232658403.1 401749..402399(-) (qstR) [Vibrio furnissii strain VFN3]
ATGCAACGCGCCAATTACGCCCGAACGATTTACTATTTGTGTCTGGATGCCACCCTCCCTCCGCCACCCCCATTGGGTGA
CGCACTCACACGACTCGCCCTGCCTGTGCCACAGATTGAACCCGAACAACTGTTGCAAGCGTATCAAGCCGACAAACATA
AAATCCTACTGTTTAATTATGGCGAACATGACGCGATTCGCCAGCGTTTAGGCCCCTTGCCCATCACCAGTCCCCACTTG
GAAACCATTTTATTTGGTGTAGAAAAACGCCTGCGCACGGAAGAACTTCTCACCTTTGGCAACCTGAAAGGCTTGTTTTA
TCAAGATGACGCGCCCCCATCGATCGCGCAGGGATTGGCGGAAATCATCAACGGTCAGAATTGGCTGCCACGCCATGTCA
GCAGTCAGTTGTTGCATTACTATCGCCACATTTTCCAGCATCATCACACGCAAGCAACCATCGAGCTCACCACACGTGAA
TTACAAATCCTACGCAGCTTGCAGACGGGCGCCTCAAACATGCAGATGGCGGAGAGCCTGTTCATCAGTGAATTTACCGT
CAAGTCGCACCTCTATCAGATCTTTAAAAAGCTCTCGGTCAAGAACCGAACCCAAGCCATCACATGGGCCAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

70.968

100

0.713
  qstR Vibrio campbellii strain DS40M4

51.389

100

0.514
  qstR Vibrio parahaemolyticus RIMD 2210633

50.926

100

0.509