Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LTC53_RS01925 Genome accession   NZ_CP089584
Coordinates   441853..443373 (-) Length   506 a.a.
NCBI ID   WP_003470343.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. undulosa strain MAI5034     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 436853..448373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTC53_RS20205 - 438317..438601 (+) 285 Protein_378 alpha/beta fold hydrolase -
  LTC53_RS01910 (LTC53_01910) - 438774..439055 (+) 282 WP_235049221.1 hypothetical protein -
  LTC53_RS01915 (LTC53_01915) - 439458..440546 (+) 1089 WP_230811780.1 lipocalin family protein -
  LTC53_RS01920 (LTC53_01920) - 440603..441700 (+) 1098 WP_235049222.1 lipocalin-like domain-containing protein -
  LTC53_RS01925 (LTC53_01925) comM 441853..443373 (-) 1521 WP_003470343.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LTC53_RS01930 (LTC53_01930) - 443387..443656 (-) 270 WP_003470344.1 accessory factor UbiK family protein -
  LTC53_RS01935 (LTC53_01935) - 443655..443807 (+) 153 WP_155522278.1 hypothetical protein -
  LTC53_RS01940 (LTC53_01940) - 443833..444171 (+) 339 WP_003470346.1 P-II family nitrogen regulator -
  LTC53_RS01945 (LTC53_01945) - 444568..446144 (+) 1577 Protein_386 beta-N-acetylglucosaminidase domain-containing protein -
  LTC53_RS01950 (LTC53_01950) speE 446579..447430 (-) 852 WP_003470348.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53500.18 Da        Isoelectric Point: 8.5177

>NTDB_id=638106 LTC53_RS01925 WP_003470343.1 441853..443373(-) (comM) [Xanthomonas translucens pv. undulosa strain MAI5034]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKDGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQACTARTL
LEVCALLNGSKTLPAAEALPAAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSAAVRVRVEQARQRQLARAGCPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLAGSDA
IATAHLTEAIGYRHLDRGEAPLARSA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=638106 LTC53_RS01925 WP_003470343.1 441853..443373(-) (comM) [Xanthomonas translucens pv. undulosa strain MAI5034]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAGGTCCATCTGTCCGG
CGGACTGCCGGCCACGCAGATCGTCGGCCTGCCAGAAGCGGCGGTGCGCGAATCGCGCGACCGGGTACGCGCCGCCATCC
TGTGCGCGCAATACGAATTCCCGGCGCGGCGCATCACCGTCAATCTGGCACCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCAATCGCGCTGGGCATCCTCGCCGCCGCAGGGCAACTCGACCCGCAGGCGCTGGGCAACTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAACTGCGCGCCGTGGACGGGGTGCTGCCGGCGGCGCTGGCCGCCGCCCAAGCAGGAC
GCACGCTGATCGTGCCCGCCGGCAACGGCCCCGAAGCGGCGCTGGCGCAGCACGTGCAGGCGTGCACTGCGCGCACCCTG
CTAGAAGTCTGCGCGCTGTTGAACGGCAGCAAGACTCTGCCCGCCGCCGAAGCCCTGCCGGCCGCGGCCACACCGTTTCC
CGACCTGAGCGACGTGCGCGGGCAGGCCCAGGCGCGGCGCGCATTGGAGATCGCGGCGGCCGGTCATCACCATCTGTTGT
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGCATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGCCGCGGCCTGGACCCGGCGCGCTGGCGGCAACGCCCCTACCGATC
CCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGTACCCATCCGCGCCCCGGCGAAATCTCGCTGGCGCATC
GCGGCGTGTTGTTCCTCGACGAGTTGCCCGAATGGAACCGGCACGCCCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACCGTCTCGCGCGCAGCACGCAGCGCCGAATTCCCGGCCCGCTTCCAGCTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGATGCCAGCGGCCGTTGCCGCTGCAGCGACGACAGCATCCGCCGCTATCGCGCGCGCATCTCCG
GCCCGTTGCTGGACCGCATCGACCTGCATGTGGACGTACCGCGCCTGCCGCCGCAGGCATTGCGCGCCGATGCCGCTCCC
GGCGAAAGCAGCGCCGCCGTACGCGTGCGGGTGGAGCAGGCGCGGCAACGCCAGCTGGCGCGCGCCGGCTGCCCCAACGG
CCAGCTCGGCCACAGCGAAACCCTGCGCGACTGCCGCCTGCAGCCGCGCGACGAAGCGCTGCTGGAACACGCCATCGACC
GCCTGCGCCTGTCGGCGCGCTCGCTGCACCGCATCCTGCGCGTGGCCCGCACCATTGCCGACCTGGCCGGCAGCGACGCG
ATCGCCACCGCGCACCTGACCGAGGCGATCGGTTACCGGCACCTGGACCGCGGCGAGGCACCATTGGCGCGCAGCGCCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.313

98.617

0.555
  comM Vibrio campbellii strain DS40M4

54.781

99.209

0.543
  comM Haemophilus influenzae Rd KW20

54.167

99.605

0.54
  comM Glaesserella parasuis strain SC1401

53.373

99.605

0.532
  comM Legionella pneumophila str. Paris

50.198

99.605

0.5
  comM Legionella pneumophila strain ERS1305867

50.198

99.605

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

100

0.447