Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DYST_RS15930 Genome accession   NZ_CP089414
Coordinates   3637826..3639325 (+) Length   499 a.a.
NCBI ID   WP_102301713.1    Uniprot ID   -
Organism   Dyella terrae strain Ely Copper Mine     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3632826..3644325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYST_RS15895 (DYST_03271) - 3632947..3633657 (+) 711 WP_102301796.1 YdcF family protein -
  DYST_RS15900 (DYST_03272) hemF 3633746..3634649 (+) 904 Protein_3142 oxygen-dependent coproporphyrinogen oxidase -
  DYST_RS15905 (DYST_03274) - 3634691..3635353 (-) 663 WP_239946579.1 hypothetical protein -
  DYST_RS15910 (DYST_03275) gpmA 3635499..3636242 (+) 744 WP_102301711.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  DYST_RS15915 (DYST_03276) - 3636356..3636877 (+) 522 WP_239946580.1 DUF1453 domain-containing protein -
  DYST_RS15920 (DYST_03277) glnK 3636882..3637220 (-) 339 WP_102301712.1 P-II family nitrogen regulator -
  DYST_RS15925 (DYST_03278) - 3637413..3637661 (+) 249 WP_102301799.1 accessory factor UbiK family protein -
  DYST_RS15930 (DYST_03279) comM 3637826..3639325 (+) 1500 WP_102301713.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DYST_RS15935 (DYST_03280) - 3639600..3641390 (+) 1791 WP_239946581.1 sodium:proton antiporter -
  DYST_RS15940 (DYST_03281) aceA 3641498..3642802 (-) 1305 WP_239946582.1 isocitrate lyase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53296.08 Da        Isoelectric Point: 7.6543

>NTDB_id=636866 DYST_RS15930 WP_102301713.1 3637826..3639325(+) (comM) [Dyella terrae strain Ely Copper Mine]
MSLAVTLSRAQEGVSAPQVMVEVHLSGGLPGTNIVGLPEAAVREARDRVRVAIQNTAFEYPNRKVTVNLAPAELPKDGGR
FDLAIALGILAAGGQVPREKLDDCEFLGELALSGALRGVSGVLPALLRARARGRRVVVPRANAAEAALVSDAEVLVADTL
ADVCGWLRGAQDLAPPGEASGIFDGTIGPDLADVRGQLQARRALEIAATGGHHLLLLGPPGTGKTMLAERLPGILPPLSE
SEALETCAVLSVAGQAVDLNLWRRRPFRAPHHTSSAAALVGGGSLPRPGEISLAHNGVLFLDELPEFGRHVLDVLREPME
SGHIVISRAARQSTFPAQFQLVAAMNPCPCGYAGDPRQRCQCTPDQIQRYRGRISGPLIDRIDLCIEVPRVPIGELGLSR
GSTDEDSATVRARVVKARQHGLMRAGRANAEITTRELERDCALGQAERQWFEGALERLGLSARAYHRTLRVARTIADLDG
GAALLDRTHLAEALMYRRF

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=636866 DYST_RS15930 WP_102301713.1 3637826..3639325(+) (comM) [Dyella terrae strain Ely Copper Mine]
ATGAGCCTTGCCGTCACCCTCAGTCGAGCCCAGGAAGGCGTCTCGGCACCCCAGGTTATGGTGGAAGTCCACCTGTCCGG
CGGCCTGCCGGGCACCAATATCGTTGGATTGCCCGAAGCCGCCGTGCGCGAAGCACGCGACCGCGTCCGCGTGGCCATCC
AGAACACGGCCTTCGAATATCCGAACCGCAAGGTCACGGTGAACCTCGCACCCGCGGAATTGCCCAAGGACGGTGGTCGT
TTCGACCTTGCCATCGCGCTCGGCATCCTTGCTGCGGGCGGCCAAGTGCCGCGTGAAAAGCTCGACGATTGCGAATTTCT
TGGCGAACTGGCCCTGTCCGGTGCTTTGCGTGGGGTATCGGGCGTGTTGCCGGCTCTGTTGCGTGCACGGGCGCGAGGTC
GGCGCGTAGTAGTGCCACGCGCCAACGCAGCCGAGGCCGCGCTCGTCTCCGATGCGGAGGTGCTGGTCGCCGACACGCTG
GCCGATGTGTGCGGGTGGCTGCGCGGCGCGCAGGATCTGGCGCCGCCGGGCGAGGCATCCGGCATCTTCGACGGAACCAT
CGGGCCTGACCTGGCAGACGTGCGCGGCCAGTTGCAAGCACGTCGCGCACTGGAAATCGCCGCTACGGGCGGTCACCACC
TGCTGCTGCTCGGTCCGCCGGGTACGGGCAAGACCATGCTTGCCGAACGCTTGCCGGGCATCCTGCCACCGCTGAGCGAG
TCAGAAGCACTGGAAACATGTGCTGTGCTCTCCGTGGCCGGGCAGGCCGTAGATCTGAATCTGTGGCGCCGCCGCCCTTT
CCGGGCACCGCACCATACGAGTTCAGCCGCTGCCCTGGTGGGTGGCGGTTCGTTGCCGCGGCCAGGAGAGATCTCGCTGG
CCCACAACGGCGTGTTGTTCCTCGACGAACTGCCGGAATTTGGCCGGCATGTGCTGGATGTGCTGCGCGAACCCATGGAG
TCGGGCCACATCGTGATTTCGCGTGCGGCGCGCCAGTCGACCTTTCCGGCCCAGTTCCAACTAGTGGCCGCGATGAATCC
GTGTCCTTGCGGTTACGCGGGCGATCCGCGCCAGCGCTGCCAGTGCACGCCCGATCAGATCCAGCGCTACCGGGGACGCA
TTTCCGGGCCGCTGATCGACCGCATCGACCTTTGCATCGAGGTGCCTAGGGTTCCGATAGGCGAACTCGGCCTGTCACGG
GGATCGACTGACGAGGATTCGGCTACGGTCCGTGCCCGCGTGGTAAAGGCCCGCCAGCATGGACTGATGCGAGCCGGCCG
AGCGAATGCCGAGATCACGACCCGCGAACTGGAGCGGGATTGCGCTCTGGGACAGGCAGAACGGCAGTGGTTTGAGGGCG
CGCTGGAGCGCCTCGGTCTGTCAGCTCGCGCCTATCACCGCACCCTGCGGGTGGCCCGGACCATCGCCGACCTGGATGGC
GGAGCCGCGCTGCTGGACCGAACTCATCTTGCGGAAGCCTTGATGTATCGCCGCTTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.338

99.599

0.561
  comM Vibrio campbellii strain DS40M4

55.332

99.599

0.551
  comM Haemophilus influenzae Rd KW20

54.491

100

0.547
  comM Glaesserella parasuis strain SC1401

53.4

100

0.535
  comM Legionella pneumophila str. Paris

50

99.8

0.499
  comM Legionella pneumophila strain ERS1305867

50

99.8

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.98

99.8

0.449