Detailed information NTG0636861

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: DYST_RS09995
• Genome accession: NZ_CP089414
• Coordinates: 2326529..2327695 (-)
• Length: 388 a.a.
• NCBI ID: WP_102302102.1
• Uniprot ID: -
• Organism: Dyella terrae strain Ely Copper Mine
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2321529..2332695

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DYST_RS09975 (DYST_02043)	-	2322177..2323940 (+)	1764	WP_102302107.1	hypothetical protein	-
DYST_RS09980 (DYST_02044)	-	2324014..2324757 (-)	744	WP_239951631.1	MHYT domain-containing protein	-
DYST_RS09985 (DYST_02045)	-	2324822..2325628 (-)	807	WP_239951633.1	hypothetical protein	-
DYST_RS09990	-	2326315..2326440 (+)	126	WP_239951634.1	BON domain-containing protein	-
DYST_RS09995 (DYST_02047)	pilU	2326529..2327695 (-)	1167	WP_102302102.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
DYST_RS10000 (DYST_02048)	pilT	2327766..2328806 (-)	1041	WP_102302101.1	type IV pilus twitching motility protein PilT	Machinery gene
DYST_RS10005 (DYST_02049)	proC	2329118..2329942 (+)	825	WP_239951635.1	pyrroline-5-carboxylate reductase	-
DYST_RS10010 (DYST_02050)	-	2329939..2330514 (+)	576	WP_239951636.1	YggT family protein	-
DYST_RS24000 (DYST_02051)	-	2330610..2331317 (+)	708	WP_275666956.1	hypothetical protein	-
DYST_RS24005 (DYST_02052)	-	2331269..2332681 (+)	1413	WP_275666957.1	M13 family metallopeptidase	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 43307.66 Da
• Isoelectric Point: 6.9604

>NTDB_id=636861 DYST_RS09995 WP_102302102.1 2326529..2327695(-) (pilU) [Dyella terrae strain Ely Copper Mine]
MSDFDFTSFLKLMVHKKASDLFITAGVAPSMKVQGRIVPITQSPLSAQQARDMVLNVMTPSQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNCVGMVLRRIESKIPTIEELSLPPVIKQLAMTKRGIIIFVGGTGTGKSTSLASMIGYRNANSTGHIIT
IEDPIEYVHKHEGCIITQRELGIDTDSWENALKNTLRQAPDVIMIGEVRTRETMEHAINFSETGHLCLCTLHANNANQAM
DRILHFFPEDRRSQLFMDLSLNLKGVVAQQLIPTPDGKARRVAVEVLLGTPLVQDYIRQGEIHKLKEVMKESTNLGMKTF
DQSLVELYHAGEISYEDALRHADSSNEVRLRIKLAQGGDAHTLSQGLDGVEIEETKDSQNFGGGLLRR

Nucleotide

• Length: 1167 bp

>NTDB_id=636861 DYST_RS09995 WP_102302102.1 2326529..2327695(-) (pilU) [Dyella terrae strain Ely Copper Mine]
ATGAGCGACTTCGATTTCACCTCCTTCCTCAAACTGATGGTGCACAAGAAGGCATCGGACCTGTTCATTACGGCCGGTGT
CGCACCCTCGATGAAGGTGCAGGGGCGCATCGTGCCGATCACGCAGAGTCCGTTGTCCGCCCAGCAGGCGCGAGACATGG
TGCTCAACGTGATGACACCCTCGCAGCGCGAGGAGTTCGAAAAGACCCACGAGTGCCAGTTCGCCATCTCGGCGCAGGGC
GTGGGCCGCTTCCGCGTGTCGTGCTTCTACCAGCGCAACTGCGTGGGCATGGTGTTGCGCCGCATCGAGTCGAAGATCCC
GACCATCGAGGAACTCAGCCTGCCGCCCGTCATCAAGCAGTTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
GCACCGGTACCGGTAAATCCACCTCGCTGGCGTCGATGATCGGCTACCGCAACGCCAACTCGACCGGCCACATCATCACC
ATCGAGGATCCGATCGAATACGTGCACAAGCACGAGGGCTGCATCATCACGCAGCGCGAGCTGGGCATCGACACGGATAG
CTGGGAAAACGCGCTGAAGAACACGCTGCGCCAAGCTCCCGACGTGATCATGATCGGCGAAGTGCGTACGCGCGAAACGA
TGGAGCATGCGATCAACTTCTCGGAAACGGGTCACCTGTGCCTGTGTACGCTGCATGCGAACAACGCCAACCAGGCGATG
GATCGCATCCTCCACTTCTTCCCGGAGGACCGTCGCTCGCAGTTGTTCATGGACCTCTCGTTGAACCTCAAGGGTGTGGT
GGCACAGCAGCTGATCCCCACGCCGGACGGCAAGGCACGTCGCGTGGCGGTGGAGGTGTTGCTGGGCACACCGCTGGTGC
AGGACTACATCCGCCAGGGCGAGATCCATAAGCTCAAGGAAGTGATGAAGGAATCCACCAACCTGGGCATGAAGACTTTC
GACCAGAGCCTGGTCGAGCTCTATCACGCCGGCGAGATCTCCTACGAGGATGCGCTACGCCACGCCGATAGCTCCAACGA
AGTGCGCTTGCGTATCAAGCTTGCACAAGGCGGTGACGCACACACGCTGTCGCAGGGCCTGGACGGTGTGGAGATCGAGG
AAACCAAAGATTCGCAGAACTTCGGTGGTGGGCTCCTGCGTCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (16-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	66.31	96.392	0.639
pilU	Acinetobacter baylyi ADP1	62.921	91.753	0.577
pilU	Vibrio cholerae strain A1552	52.247	91.753	0.479
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.323	95.876	0.387