Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LT989_RS21570 Genome accession   NZ_CP089316
Coordinates   4420691..4422211 (-) Length   506 a.a.
NCBI ID   WP_126957739.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain K218     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4415691..4427211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT989_RS21560 (LT989_21560) hdfR 4419376..4420221 (-) 846 WP_008787063.1 HTH-type transcriptional regulator HdfR -
  LT989_RS21565 (LT989_21565) maoP 4420328..4420666 (+) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  LT989_RS21570 (LT989_21570) comM 4420691..4422211 (-) 1521 WP_126957739.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LT989_RS21575 (LT989_21575) ilvL 4422564..4422662 (+) 99 WP_001311244.1 ilv operon leader peptide -
  LT989_RS21580 (LT989_21580) ilvG 4422802..4424448 (+) 1647 WP_126957737.1 acetolactate synthase 2 catalytic subunit -
  LT989_RS21585 (LT989_21585) ilvM 4424445..4424708 (+) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  LT989_RS21590 (LT989_21590) - 4424726..4425655 (+) 930 WP_003829030.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55033.93 Da        Isoelectric Point: 7.1474

>NTDB_id=636518 LT989_RS21570 WP_126957739.1 4420691..4422211(-) (comM) [Citrobacter portucalensis strain K218]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFTPCALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRARAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSQVKG
EDSATVKQRVMAARERQYQRQNKLNAHLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=636518 LT989_RS21570 WP_126957739.1 4420691..4422211(-) (comM) [Citrobacter portucalensis strain K218]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCAGCTATTACCATCGAGGTACATATCAGTAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAAGCCCGCGATCGGGTTCGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCGAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCAGCGTCTGAGCAGCTTACAACCCATAACCTCGATACATATGAGCTGGT
AGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACTGAAGCTATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTGGGACTGATACACGGTGAAGGGTGCCTTATTGCCGATCATCTA
CAGGCTGTATGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGACCATCATCGGCAGATTTTACCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAAGGTAAACGCGGACTGGAACTTACCGCAGCTGGCGGTCATAACCTCT
TACTCATCGGGCCGCCGGGAACGGGTAAGACCATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGCAATGAT
GAGGCACTGGAAAGCGCCGCGATTCTAAGTCTGGTCAATTCCGACACGCTACAAAAACAGTGGAAACAACGCCCTTTTCG
TTCGCCGCATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGCGAGATATCTCTGGCGC
ATAACGGCATACTGTTTCTGGATGAACTTCCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGAGAGCCCATTGAGTCC
GGGCAGATTCATTTATCCCGCGCTCGGGCAAAAATAACTTACCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCCAG
CCCAACAGGACATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACACTACGCTACCTCAATCGATTATCAGGTC
CATTTCTTGACCGCTTCGATCTCTCCCTCGAAATCCCCTTACCGCCGCCCGGCATACTCAGCCAGAGCCAGGTAAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGCGTTATGGCAGCACGAGAGCGTCAGTATCAGCGGCAGAATAAGTTAAATGCGCA
TCTGGACAGTCAGGATATCCATAAATACTGTCCATTGCGTAGCGACGATGCGCAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCCATCCGCGCCTGGTTACGCCTGATAAAGGTCGCTCGAACGATCGCGGATATAGAACAATCTGACCATATA
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTGCAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.964

99.209

0.585
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Glaesserella parasuis strain SC1401

57.874

100

0.581
  comM Haemophilus influenzae Rd KW20

57.647

100

0.581
  comM Legionella pneumophila str. Paris

47.485

98.221

0.466
  comM Legionella pneumophila strain ERS1305867

47.485

98.221

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

99.605

0.427