Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LS633_RS09070 Genome accession   NZ_CP089304
Coordinates   1914257..1915750 (+) Length   497 a.a.
NCBI ID   WP_232392629.1    Uniprot ID   -
Organism   Pseudomonas sp. NIBR-H-19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1909257..1920750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS633_RS09045 (LS633_09045) - 1909651..1910988 (-) 1338 WP_210704678.1 ammonium transporter -
  LS633_RS09050 (LS633_09050) glnK 1911026..1911364 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  LS633_RS09055 (LS633_09055) - 1911779..1912039 (+) 261 WP_007920416.1 accessory factor UbiK family protein -
  LS633_RS09060 (LS633_09060) - 1912407..1912919 (+) 513 WP_210704677.1 Bro-N domain-containing protein -
  LS633_RS09065 (LS633_09065) - 1913115..1913660 (+) 546 WP_332461522.1 N-acetyltransferase -
  LS633_RS09070 (LS633_09070) comM 1914257..1915750 (+) 1494 WP_232392629.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LS633_RS09075 (LS633_09075) - 1915747..1916961 (-) 1215 WP_210706158.1 aldose 1-epimerase family protein -
  LS633_RS09080 (LS633_09080) - 1917178..1919154 (-) 1977 WP_232392630.1 methyl-accepting chemotaxis protein -
  LS633_RS09085 (LS633_09085) - 1919340..1920260 (-) 921 WP_232392631.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52963.17 Da        Isoelectric Point: 8.0491

>NTDB_id=636282 LS633_RS09070 WP_232392629.1 1914257..1915750(+) (comM) [Pseudomonas sp. NIBR-H-19]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDEVECLGELALSGAVRPVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLMHASKPYPDLNEVQGQVAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPQVKP
GEDSASAAALVAEARERQLKRQGCANAFLDLPGLKRHCKLSTADETWLESACERLTLSLRSAHRLLKVARTLADLEQVDA
IRREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=636282 LS633_RS09070 WP_232392629.1 1914257..1915750(+) (comM) [Pseudomonas sp. NIBR-H-19]
ATGTCCCTCTCCATCGTCCACAGTCGCGCCCAGATTGGCGTGGATGCTCCCGCCGTCACTGTCGAAGTTCATCTGGCAAA
CGGTCTGCCCTCCCTGACCATGGTCGGACTGCCCGAGGCGGCGGTGAAGGAGAGCAAGGATCGGGTACGCAGCGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACTTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTTGATCTGGCGATTGCCTTGGGGATTTTGTCGGCGAGTGTGCAGGTGCCGTGTCTGACGCTGGATGAGGTGGAGTGCCT
CGGAGAGCTGGCGTTGTCCGGCGCGGTGCGGCCGGTACGCGGCGTGTTGCCAGCGGCACTGGCGGCGCGCAAGGCCGGAC
GGGCGTTGGTGGTGCCGCGAGCGAATGCCGAGGAGGCGTGTCTGGCTTCGGGGTTGAAGGTGTTTGCGGTGGATCATTTG
TTGGAAGCGGTGGCGCATTTCAATGGGCATACGCCGGTTGAGCCCTATGTCTCCGACGGACTGATGCATGCCAGCAAGCC
TTATCCCGACTTGAATGAAGTGCAGGGGCAAGTGGCGGCGAAACGAGCGCTGCTGATTGCTGCTGCGGGAGCGCATAACC
TGTTGTTCAGTGGGCCGCCTGGGACGGGTAAGACATTGTTGGCGAGTCGCCTGCCGGGGCTGTTGCCGCCGCTGGCCGAG
AGTGAAGCACTAGAGGTGGCGGCGATTCAATCCGTCGCCAGCGGCGTGCCACTGACCCATTGGCCGCAGCGCCCCTTTCG
CCAGCCGCATCACTCGGCGTCAGGCCCGGCACTGGTCGGCGGTAGTTCAAAACCACAACCCGGCGAGATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGATGAGTTGCCGGAGTTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCC
GGGCATATCGTGATTGCCCGGGCCAAGGATCGCGTGCGTTTCCCGGCGCGGTTTCAGTTGGTGGCAGCGATGAATCCGTG
TCCCTGTGGATATCTTGGCGAGCCGAGTGGCAAGTGCTCGTGCACGCCGGACATGGTGCAGCGCTATCGCAACAAGCTCT
CGGGGCCGTTACTGGACCGGATCGATTTGCACCTGACGGTGGCGCGGGAAGCGACGGCGTTGAACCCGCAGGTGAAACCG
GGAGAGGACAGCGCCAGCGCCGCGGCGTTGGTGGCCGAGGCGCGTGAGCGGCAGCTGAAGCGTCAAGGCTGCGCCAATGC
ATTTCTCGATCTGCCTGGACTGAAAAGGCACTGCAAGTTATCCACAGCCGACGAAACCTGGCTGGAGTCAGCCTGCGAAA
GGCTGACTTTATCGCTTCGCTCGGCACATCGGTTACTCAAGGTTGCCCGGACACTGGCAGACCTCGAGCAAGTCGATGCA
ATCAGACGTGAGCACCTGGCCGAAGCGCTGCAATACCGGCCGGCGACGCCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Vibrio campbellii strain DS40M4

54.343

99.598

0.541
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.4

100

0.527
  comM Legionella pneumophila str. Paris

50.201

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.201

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.908

100

0.463