Detailed information NTG0636216

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA17_RS05965
• Genome accession: NZ_CP106745
• Coordinates: 1236969..1237973 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA17
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1231969..1242973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA17_RS05935 (PALA17_01176)	fghA	1232061..1232912 (+)	852	WP_012613727.1	S-formylglutathione hydrolase	-
PALA17_RS05940 (PALA17_01177)	ispF	1232983..1233456 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA17_RS05945 (PALA17_01178)	truD	1233453..1234520 (+)	1068	WP_012613728.1	tRNA pseudouridine(13) synthase TruD	-
PALA17_RS05950 (PALA17_01179)	surE	1234508..1235257 (+)	750	WP_012613729.1	5'/3'-nucleotidase SurE	-
PALA17_RS05955 (PALA17_01180)	-	1235290..1235925 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA17_RS05960 (PALA17_01181)	-	1235971..1236864 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA17_RS05965 (PALA17_01182)	rpoS	1236969..1237973 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA17_RS05970 (PALA17_01183)	fdxA	1238400..1238723 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PALA17_RS05975 (PALA17_01184)	mutS	1238790..1241357 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
PALA17_RS05980 (PALA17_01185)	-	1241483..1242490 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=636216 PALA17_RS05965 WP_003113871.1 1236969..1237973(+) (rpoS) [Pseudomonas aeruginosa strain PALA17]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=636216 PALA17_RS05965 WP_003113871.1 1236969..1237973(+) (rpoS) [Pseudomonas aeruginosa strain PALA17]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653