Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   LSG31_RS18215 Genome accession   NZ_CP089291
Coordinates   3790903..3791193 (-) Length   96 a.a.
NCBI ID   WP_347436462.1    Uniprot ID   -
Organism   Fodinisporobacter ferrooxydans strain MYW30-H2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3785903..3796193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG31_RS18215 (LSG31_18130) htrA 3790903..3791193 (-) 291 WP_347436462.1 trypsin-like peptidase domain-containing protein Regulator
  LSG31_RS18220 (LSG31_18135) - 3791259..3792806 (-) 1548 WP_347436463.1 recombinase family protein -
  LSG31_RS18225 (LSG31_18140) - 3793042..3793437 (-) 396 WP_347436464.1 hypothetical protein -
  LSG31_RS18230 (LSG31_18145) - 3793754..3794350 (-) 597 WP_347436465.1 class I SAM-dependent methyltransferase -
  LSG31_RS18235 (LSG31_18150) - 3794347..3795423 (-) 1077 WP_347436466.1 TIGR01212 family radical SAM protein -
  LSG31_RS18240 (LSG31_18155) - 3795443..3796030 (-) 588 WP_347436467.1 trypsin-like peptidase domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10184.79 Da        Isoelectric Point: 10.1004

>NTDB_id=636216 LSG31_RS18215 WP_347436462.1 3790903..3791193(-) (htrA) [Fodinisporobacter ferrooxydans strain MYW30-H2]
MCQFVSIGNPLGLDHSVTVGIVSAKERPITIGDRHYPRLIQTDAAINRGNSGGPLINLRGEVIGVNTAVSQSSQGIGFAI
SIDVVRKAVAEMMKRI

Nucleotide


Download         Length: 291 bp        

>NTDB_id=636216 LSG31_RS18215 WP_347436462.1 3790903..3791193(-) (htrA) [Fodinisporobacter ferrooxydans strain MYW30-H2]
TTGTGTCAATTTGTTTCAATCGGGAATCCATTAGGATTGGATCACTCGGTAACCGTTGGTATCGTCAGTGCAAAGGAACG
CCCGATTACGATCGGCGATCGGCATTATCCCCGTTTGATCCAGACAGATGCGGCGATTAATCGAGGGAACAGCGGAGGTC
CCCTCATCAATTTGCGCGGGGAAGTGATCGGTGTCAACACGGCCGTCAGCCAGAGTTCCCAAGGAATTGGATTTGCCATT
TCCATCGATGTTGTGCGAAAAGCGGTTGCCGAAATGATGAAACGCATATAG

Domains

Predicted by InterproScan.

Trypsin-like peptidase domain (Trypsin_2)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

49.485

100

0.5
  htrA Streptococcus gordonii str. Challis substr. CH1

46.875

100

0.469
  htrA Streptococcus mitis NCTC 12261

44.828

90.625

0.406
  htrA Streptococcus pneumoniae Rx1

44.828

90.625

0.406
  htrA Streptococcus pneumoniae D39

44.828

90.625

0.406
  htrA Streptococcus pneumoniae R6

44.828

90.625

0.406
  htrA Streptococcus pneumoniae TIGR4

44.828

90.625

0.406