NTDB

Overview

Name	ciaR	Type	Regulator
Locus tag	PALA13_RS18385	Genome accession	NZ_CP106682
Coordinates	3936770..3937441 (-)	Length	223 a.a.
NCBI ID	WP_003090494.1	Uniprot ID	A0A0H2ZC88
Organism	Pseudomonas aeruginosa strain PALA13
Function	repress competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3931770..3942441

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA13_RS32255	-	3933107..3934126 (+)	1020	Protein_3644	chemotaxis protein	-
PALA13_RS32260	-	3934496..3935032 (+)	537	Protein_3645	methyl-accepting chemotaxis protein	-
PALA13_RS18375 (PALA13_03648)	-	3935037..3935345 (-)	309	WP_003097699.1	hypothetical protein	-
PALA13_RS18380 (PALA13_03649)	carS	3935436..3936773 (-)	1338	WP_003090493.1	two-component system sensor histidine kinase CarS	-
PALA13_RS18385 (PALA13_03650)	ciaR	3936770..3937441 (-)	672	WP_003090494.1	two-component system response regulator CarR	Regulator
PALA13_RS18390 (PALA13_03651)	-	3937441..3937755 (-)	315	WP_003097704.1	PepSY domain-containing protein	-
PALA13_RS18395 (PALA13_03652)	-	3937755..3938063 (-)	309	WP_003090497.1	PepSY domain-containing protein	-
PALA13_RS18400 (PALA13_03653)	-	3938278..3939360 (+)	1083	WP_003113385.1	hypothetical protein	-
PALA13_RS18405 (PALA13_03654)	-	3939387..3940280 (+)	894	WP_003116712.1	hypothetical protein	-
PALA13_RS18410 (PALA13_03655)	-	3940264..3940530 (+)	267	WP_003115326.1	DUF5329 domain-containing protein	-
PALA13_RS18415 (PALA13_03656)	-	3940531..3941724 (-)	1194	WP_003122598.1	NnrS family protein	-
PALA13_RS18420 (PALA13_03657)	ppyR	3941711..3941968 (-)	258	WP_003090502.1	psl/pyoverdine operon transcriptional regulator PpyR	-

Sequence

Protein

Download Length: 223 a.a. Molecular weight: 24729.20 Da Isoelectric Point: 5.8445

                                >NTDB_id=635838 PALA13_RS18385 WP_003090494.1 3936770..3937441(-) (ciaR) [Pseudomonas aeruginosa strain PALA13]

MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGLEILQEWRGLGLATPVLILTA

RGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAHGLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLR

YFMLHPGQVLSKGHLAEHLYDGETERDSNVIEVHVNHLRRKLGREVIETRRGQGYRYAGVAAG

Nucleotide

Download Length: 672 bp

                                >NTDB_id=635838 PALA13_RS18385 WP_003090494.1 3936770..3937441(-) (ciaR) [Pseudomonas aeruginosa strain PALA13]

ATGCGGTTGCTGCTGGTTGAGGATCACGTTCCCCTGGCCGACGAACTGATGGCCAGCCTGACCCGCCAGGGCTACGCGGT

GGACTGGCTGGCCGACGGCCGCGACGCGGCGGTGCAGGGCGCCAGCGAGCCCTACGATCTGATCATCCTCGACCTCGGCC

TGCCCGGGCGTCCCGGCCTGGAGATACTCCAGGAGTGGCGTGGGCTGGGACTCGCGACTCCGGTGCTGATCCTCACCGCG

CGCGGTTCCTGGGCCGAACGCATCGATGGGCTCAAGGCCGGTGCCGACGACTACCTGACCAAGCCGTTCCATCCGGAAGA

GCTGGCCTTGCGCATCCAGGCCCTGTTGCGCCGCGCCCATGGGCTGGCCAACCAGAGCCAGCTGGAGGCCGCCGGGCTGC

GCCTGGACGAGCAGCGCCAGTGCGTGTGCCTGAACGGCGCCGACGTCGACCTGACCGCCGCCGAATTCCGCCTGCTGCGC

TATTTCATGCTGCACCCCGGCCAGGTCCTGTCCAAGGGGCACCTGGCCGAGCATCTGTACGACGGCGAGACCGAACGCGA

TTCCAACGTCATCGAGGTCCACGTCAACCACCTGCGGCGCAAGCTCGGCCGCGAGGTGATCGAGACCCGCCGTGGCCAGG

GCTACCGCTACGCCGGGGTGGCCGCCGGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-216)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0H2ZC88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ciaR	Streptococcus mutans UA159	37.727	98.655	0.372
ciaR	Streptococcus pneumoniae Rx1	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae D39	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae R6	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae TIGR4	37.273	98.655	0.368
micA	Streptococcus pneumoniae Cp1015	35.683	100	0.363
vicR	Streptococcus mutans UA159	35.526	100	0.363

Detailed information NTG0635838