Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LTQ54_RS08670 Genome accession   NZ_CP089203
Coordinates   1901039..1902562 (-) Length   507 a.a.
NCBI ID   WP_004735753.1    Uniprot ID   A0A7W4CAC5
Organism   Vibrio splendidus strain 2_C04b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1896039..1907562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ54_RS08645 (LTQ54_08645) - 1896077..1896340 (+) 264 WP_102503297.1 YihD family protein -
  LTQ54_RS08650 (LTQ54_08650) ccoG 1896667..1898085 (+) 1419 WP_004735757.1 cytochrome c oxidase accessory protein CcoG -
  LTQ54_RS08655 (LTQ54_08655) - 1898160..1899146 (+) 987 WP_004735756.1 serine/threonine protein kinase -
  LTQ54_RS08660 (LTQ54_08660) - 1899202..1899801 (+) 600 WP_004735755.1 thiol:disulfide interchange protein DsbA/DsbL -
  LTQ54_RS08665 (LTQ54_08665) - 1899941..1900897 (+) 957 WP_243578698.1 DUF2860 domain-containing protein -
  LTQ54_RS08670 (LTQ54_08670) comM 1901039..1902562 (-) 1524 WP_004735753.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LTQ54_RS08675 (LTQ54_08675) ilvG 1903035..1904681 (+) 1647 WP_243578699.1 acetolactate synthase 2 catalytic subunit -
  LTQ54_RS08680 (LTQ54_08680) ilvM 1904683..1904967 (+) 285 WP_017077311.1 acetolactate synthase 2 small subunit -
  LTQ54_RS08685 (LTQ54_08685) - 1904980..1905948 (+) 969 WP_004735750.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55592.70 Da        Isoelectric Point: 7.6532

>NTDB_id=635696 LTQ54_RS08670 WP_004735753.1 1901039..1902562(-) (comM) [Vibrio splendidus strain 2_C04b]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHHVDVSDNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGNEQ
IEKKHLSEALGYRAMDRLLKQLSAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=635696 LTQ54_RS08670 WP_004735753.1 1901039..1902562(-) (comM) [Vibrio splendidus strain 2_C04b]
ATGGGACTCGCGATAATTCACAGCCGGGCTAGTGTGGGAGTAGAGGCACCAGAAGTGACTGTTGAAGTGCATATAAGCAA
CGGTATGCCTGGGTTTACATTGGTGGGGCTACCTGAAACGACGGTCAAGGAATCTAAAGATCGAGTCAGGAGTGCTATCA
TCAATTCTCGCTTTGAATTTCCATCAAAAAGGATCACGGTCAACCTCGCGCCTGCTGATTTACCCAAGGAGGGAGGCCGT
TTTGATCTGCCAATCGCGCTTGGAATCTTGGTGGCGTCAGATCAGCTTCCGACATCAAAAATAGCTCAACATGAATTTAT
CGGTGAGTTGGCATTGTCAGGAGAGTTGCGCTCGGTAAAGGGCGTTCTGCCTGCGACGTTAGCCGCCGATAGTGTCGAGC
GATGCTTAGTGGTTCCACATCACAATGGTGATCAGGCGGCCTTAGTCGGCAAGGGGGCCCATAAATCAGCGCAAACCTTG
CTAGAGGTTTGTGCGGATATGTGTGGCCAGGCTCAGCTTGGTTTATATCGAACCGAGCATCATCATGTCGATGTGTCTGA
TAATCGTGACTTACAAGATATTATTGGCCAGCAGCAAGGTAAGCGAGCATTGGAGATCGCCGCAGCGGGCAACCATAACC
TGCTTTTTCTCGGCCCGCCCGGAACTGGAAAAACCATGTTGGCTTCTCGATTGCGCGATTTGTTGCCCGAAATGAGTGAC
GACGAGGCGATGGAAACTGCTTCGGTGGCTTCTTTAACGCAACAAGAGATTAATCAATACAACTGGAAACAACGACCTTT
CCGTTCTCCACACCATTCGAGTTCGATGGCAGCATTGGTCGGTGGTGGCTCGATACCTCGCCCCGGTGAGATATCTTTGG
CGCATAATGGCTTATTGTTTCTTGATGAGATGCCAGAGTTTGAGCGTAAGGTGCTTGATTCACTGCGAGAGCCGCTAGAG
TCGGGTGAAATCATTATCTCCCGTGTCGCGGGTAAGACTCGCTTTCCTGCTCGCTTTCAATTAGTCGGTGCACTTAACCC
AAGTCCAACAGGTTATTACGAGGGCAATCAAGCTCGAGCGAACCCGCAAATTATCCTGCGTTACCTCAACCGCTTATCTG
GGCCATTGTTAGATAGATTCGATATGTCATTGGAGATCCCTCTATTGCCCAAAGGGATGTTAGCCGAAGGAGGCGATCGT
GGAGAAACCACTCAAGTCGTGAAGCAACGAGTTAAACAAGCGCGTCAGTTGATGTTATCTCGAAACCATAAGTCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAAAAGTATTGCCCATTGCGACGCGAAGATGCGGAGTTTCTTGAGACCGCACTGCATC
GATTAGGTTTATCGATTCGTGCTTATCATCGAATCATCAAGGTAGCGCGAACTATTGCAGACTTAGAGGGTAACGAGCAG
ATTGAAAAGAAGCATTTATCGGAGGCGCTTGGCTATCGAGCGATGGATCGCTTGCTGAAACAACTTTCAGCTCAAGCGGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4CAC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Vibrio campbellii strain DS40M4

83.235

100

0.832
  comM Haemophilus influenzae Rd KW20

65.483

100

0.655
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

48.589

97.83

0.475
  comM Legionella pneumophila strain ERS1305867

48.589

97.83

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.49

99.803

0.424