Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LTQ54_RS07095 Genome accession   NZ_CP089203
Coordinates   1563617..1564186 (-) Length   189 a.a.
NCBI ID   WP_102461778.1    Uniprot ID   -
Organism   Vibrio splendidus strain 2_C04b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1558617..1569186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ54_RS07075 (LTQ54_07075) - 1559023..1559355 (-) 333 WP_004735948.1 hypothetical protein -
  LTQ54_RS07080 (LTQ54_07080) pilO 1559348..1559995 (-) 648 WP_243579486.1 type 4a pilus biogenesis protein PilO -
  LTQ54_RS07085 (LTQ54_07085) - 1559995..1561437 (-) 1443 WP_102482202.1 MSHA biogenesis protein MshI -
  LTQ54_RS07090 (LTQ54_07090) csrD 1561440..1563455 (-) 2016 WP_004735952.1 RNase E specificity factor CsrD -
  LTQ54_RS07095 (LTQ54_07095) ssb 1563617..1564186 (-) 570 WP_102461778.1 single-stranded DNA-binding protein Machinery gene
  LTQ54_RS07100 (LTQ54_07100) qstR 1564465..1565112 (+) 648 WP_017084684.1 LuxR C-terminal-related transcriptional regulator Regulator
  LTQ54_RS07105 (LTQ54_07105) galU 1565270..1566142 (+) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20886.02 Da        Isoelectric Point: 5.2358

>NTDB_id=635692 LTQ54_RS07095 WP_102461778.1 1563617..1564186(-) (ssb) [Vibrio splendidus strain 2_C04b]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGSWGQPQQPQQQQQQAQQQYSAPAQQ
QPKAPQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=635692 LTQ54_RS07095 WP_102461778.1 1563617..1564186(-) (ssb) [Vibrio splendidus strain 2_C04b]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCCAATGG
CGGTGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTCGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTAGTTGGGGTCAGCCACAGCAGCCACAACAGCAGCAGCAACAAGCACAACAACAATACAGTGCTCCAGCTCAACAG
CAGCCGAAAGCACCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACAT
CCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80

100

0.804
  ssb Glaesserella parasuis strain SC1401

56.383

99.471

0.561
  ssb Neisseria meningitidis MC58

45.699

98.413

0.45
  ssb Neisseria gonorrhoeae MS11

45.699

98.413

0.45