Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   LTQ54_RS07100 Genome accession   NZ_CP089203
Coordinates   1564465..1565112 (+) Length   215 a.a.
NCBI ID   WP_017084684.1    Uniprot ID   -
Organism   Vibrio splendidus strain 2_C04b     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1559465..1570112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ54_RS07085 (LTQ54_07085) - 1559995..1561437 (-) 1443 WP_102482202.1 MSHA biogenesis protein MshI -
  LTQ54_RS07090 (LTQ54_07090) csrD 1561440..1563455 (-) 2016 WP_004735952.1 RNase E specificity factor CsrD -
  LTQ54_RS07095 (LTQ54_07095) ssb 1563617..1564186 (-) 570 WP_102461778.1 single-stranded DNA-binding protein Machinery gene
  LTQ54_RS07100 (LTQ54_07100) qstR 1564465..1565112 (+) 648 WP_017084684.1 LuxR C-terminal-related transcriptional regulator Regulator
  LTQ54_RS07105 (LTQ54_07105) galU 1565270..1566142 (+) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LTQ54_RS07110 (LTQ54_07110) uvrA 1566373..1569204 (+) 2832 WP_017078847.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25013.17 Da        Isoelectric Point: 9.7938

>NTDB_id=635693 LTQ54_RS07100 WP_017084684.1 1564465..1565112(+) (qstR) [Vibrio splendidus strain 2_C04b]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYKMTPDDLMLFDRKQSNRILLVDYKEVPRLINLHPNLPVMWKNHE
IILFNVPKALPTSELITFGVLKGLFYNSEEKAKIAKGLEEVINGDNWLPRKVASQLLFYYRNIVSTNTTPTNVDLTIREL
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=635693 LTQ54_RS07100 WP_017084684.1 1564465..1565112(+) (qstR) [Vibrio splendidus strain 2_C04b]
ATGAGAAAATCTCGATACGCTCGCACTTTGCATTTTCTGTGCATCGACCCAAACGACACCTATCTACATGTAAAAGAGAT
AGAAAAGCACTTATCTATTATTCTCTACAAAATGACACCGGACGATTTGATGTTATTTGATCGAAAGCAGAGCAACCGAA
TTTTACTGGTTGATTACAAAGAGGTGCCTCGATTAATCAACCTTCATCCAAATCTACCTGTGATGTGGAAAAATCATGAG
ATCATTCTATTCAACGTCCCAAAAGCTCTTCCCACATCAGAGTTGATTACGTTTGGCGTATTAAAAGGTCTCTTTTACAA
CTCAGAAGAGAAAGCCAAAATAGCGAAGGGGCTTGAAGAAGTGATTAATGGAGACAATTGGCTACCTAGAAAAGTGGCAA
GCCAATTGTTGTTCTACTATCGAAATATCGTGAGCACCAATACAACCCCCACCAATGTCGACTTAACCATTAGAGAGCTA
CAAGTGATTCGCTGCCTTCAATCAGGCTCATCAAACACGCAAATAGCCGATGACTTGTTTATTAGCGAATTCACGGTCAA
ATCTCACCTTTATCAGATATTTCGTAAGCTGGCCGTTAAAAATCGAGTCCAAGCTATTGCATGGGCAAACCAGAACTTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

56.279

100

0.563
  qstR Vibrio parahaemolyticus RIMD 2210633

53.953

100

0.54
  qstR Vibrio cholerae strain A1552

49.533

99.535

0.493