Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LTQ03_RS05265 Genome accession   NZ_CP089201
Coordinates   1184429..1184995 (-) Length   188 a.a.
NCBI ID   WP_017078845.1    Uniprot ID   A0A1R3FC98
Organism   Vibrio splendidus strain 1_C04a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1179429..1189995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS05245 (LTQ03_05245) - 1179835..1180167 (-) 333 WP_004735948.1 hypothetical protein -
  LTQ03_RS05250 (LTQ03_05250) pilO 1180160..1180807 (-) 648 WP_061025067.1 type 4a pilus biogenesis protein PilO -
  LTQ03_RS05255 (LTQ03_05255) - 1180807..1182249 (-) 1443 WP_102501138.1 MSHA biogenesis protein MshI -
  LTQ03_RS05260 (LTQ03_05260) csrD 1182252..1184267 (-) 2016 WP_243584072.1 RNase E specificity factor CsrD -
  LTQ03_RS05265 (LTQ03_05265) ssb 1184429..1184995 (-) 567 WP_017078845.1 single-stranded DNA-binding protein Machinery gene
  LTQ03_RS05270 (LTQ03_05270) qstR 1185274..1185921 (+) 648 WP_243584073.1 LuxR C-terminal-related transcriptional regulator Regulator
  LTQ03_RS05275 (LTQ03_05275) galU 1186079..1186951 (+) 873 WP_243584074.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20757.89 Da        Isoelectric Point: 5.2358

>NTDB_id=635645 LTQ03_RS05265 WP_017078845.1 1184429..1184995(-) (ssb) [Vibrio splendidus strain 1_C04a]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGSWGQPQQPQQQQQAQQQYSAPAQQQ
PKAPQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=635645 LTQ03_RS05265 WP_017078845.1 1184429..1184995(-) (ssb) [Vibrio splendidus strain 1_C04a]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCCAATGG
CGGTGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTCGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTAGTTGGGGTCAGCCACAGCAGCCACAACAGCAGCAACAAGCACAACAACAATACAGTGCTCCAGCTCAACAGCAG
CCGAAAGCACCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCC
ATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3FC98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.423

100

0.809
  ssb Glaesserella parasuis strain SC1401

56.842

100

0.574
  ssb Neisseria meningitidis MC58

47.568

98.404

0.468
  ssb Neisseria gonorrhoeae MS11

47.568

98.404

0.468