Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   LTQ03_RS05270 Genome accession   NZ_CP089201
Coordinates   1185274..1185921 (+) Length   215 a.a.
NCBI ID   WP_243584073.1    Uniprot ID   -
Organism   Vibrio splendidus strain 1_C04a     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180274..1190921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS05255 (LTQ03_05255) - 1180807..1182249 (-) 1443 WP_102501138.1 MSHA biogenesis protein MshI -
  LTQ03_RS05260 (LTQ03_05260) csrD 1182252..1184267 (-) 2016 WP_243584072.1 RNase E specificity factor CsrD -
  LTQ03_RS05265 (LTQ03_05265) ssb 1184429..1184995 (-) 567 WP_017078845.1 single-stranded DNA-binding protein Machinery gene
  LTQ03_RS05270 (LTQ03_05270) qstR 1185274..1185921 (+) 648 WP_243584073.1 LuxR C-terminal-related transcriptional regulator Regulator
  LTQ03_RS05275 (LTQ03_05275) galU 1186079..1186951 (+) 873 WP_243584074.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LTQ03_RS05280 (LTQ03_05280) uvrA 1187198..1190029 (+) 2832 WP_243584075.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24999.14 Da        Isoelectric Point: 9.7938

>NTDB_id=635646 LTQ03_RS05270 WP_243584073.1 1185274..1185921(+) (qstR) [Vibrio splendidus strain 1_C04a]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYKMTPDDLMLFDRKQSNRILLVDYKEVPRLINLHPNLPVMWKNHE
IILFNAPKALPTSELITFGVLKGLFYNTEEKAKIAKGLEEVINGDNWLPRKVASQLLFYYRNIVSTNTTPTNVDLTIREL
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=635646 LTQ03_RS05270 WP_243584073.1 1185274..1185921(+) (qstR) [Vibrio splendidus strain 1_C04a]
ATGAGAAAGTCTCGATACGCTCGCACTTTGCATTTTCTGTGCATCGACCCAAACGACACCTATCTACATGTAAAAGAGAT
AGAAAAGCACTTGTCTATTATTCTCTACAAAATGACACCGGACGATTTGATGTTATTTGATCGAAAGCAGAGCAACCGAA
TTTTACTGGTTGATTACAAAGAGGTGCCTCGATTAATCAACCTTCATCCAAATCTACCTGTGATGTGGAAAAATCATGAG
ATCATTCTATTCAACGCCCCCAAAGCTCTTCCCACATCGGAGTTGATTACGTTTGGCGTATTAAAAGGTCTCTTTTACAA
CACTGAAGAGAAAGCCAAAATAGCGAAGGGGCTTGAAGAGGTCATTAATGGAGACAACTGGCTACCTAGAAAAGTGGCAA
GCCAATTACTCTTCTACTATCGAAATATCGTGAGCACCAATACCACCCCTACTAATGTCGACTTAACCATTAGAGAGCTG
CAAGTGATTCGCTGCCTTCAATCAGGCTCATCAAACACGCAAATAGCCGATGACTTGTTTATTAGCGAATTCACCGTCAA
ATCTCATCTTTATCAAATATTTCGCAAGTTAGCCGTTAAGAATAGAGTCCAAGCTATTGCATGGGCAAACCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

55.814

100

0.558
  qstR Vibrio parahaemolyticus RIMD 2210633

54.419

100

0.544
  qstR Vibrio cholerae strain A1552

49.065

99.535

0.488