Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LRO88_RS19960 Genome accession   NZ_CP089148
Coordinates   3662672..3663394 (-) Length   240 a.a.
NCBI ID   WP_124047882.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3657672..3668394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS19925 fliW 3657811..3658242 (-) 432 WP_124047883.1 flagellar assembly protein FliW -
  LRO88_RS19930 yviE 3658263..3658838 (-) 576 WP_015384781.1 DUF6470 family protein -
  LRO88_RS19935 flgL 3658885..3659781 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  LRO88_RS19940 flgK 3659792..3661315 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  LRO88_RS19945 flgN 3661334..3661816 (-) 483 WP_041351273.1 flagellar protein FlgN -
  LRO88_RS19950 flgM 3661832..3662098 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  LRO88_RS19955 yvyF 3662179..3662598 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  LRO88_RS19960 comFC 3662672..3663394 (-) 723 WP_124047882.1 comF operon protein ComFC Machinery gene
  LRO88_RS19965 comFB 3663358..3663654 (-) 297 WP_015483764.1 late competence protein ComFB -
  LRO88_RS19970 comFA 3663714..3665105 (-) 1392 WP_072173458.1 ATP-dependent helicase ComFA Machinery gene
  LRO88_RS19975 fakBA 3665211..3666056 (-) 846 WP_014481053.1 DegV family protein -
  LRO88_RS19980 degU 3666154..3666843 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  LRO88_RS19985 degS 3666926..3668083 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27522.77 Da        Isoelectric Point: 9.1349

>NTDB_id=635331 LRO88_RS19960 WP_124047882.1 3662672..3663394(-) (comFC) [Bacillus subtilis strain NIB353]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMDIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=635331 LRO88_RS19960 WP_124047882.1 3662672..3663394(-) (comFC) [Bacillus subtilis strain NIB353]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGGATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGTTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988