Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LRO88_RS19980 Genome accession   NZ_CP089148
Coordinates   3666154..3666843 (-) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3661154..3671843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS19945 flgN 3661334..3661816 (-) 483 WP_041351273.1 flagellar protein FlgN -
  LRO88_RS19950 flgM 3661832..3662098 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  LRO88_RS19955 yvyF 3662179..3662598 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  LRO88_RS19960 comFC 3662672..3663394 (-) 723 WP_124047882.1 comF operon protein ComFC Machinery gene
  LRO88_RS19965 comFB 3663358..3663654 (-) 297 WP_015483764.1 late competence protein ComFB -
  LRO88_RS19970 comFA 3663714..3665105 (-) 1392 WP_072173458.1 ATP-dependent helicase ComFA Machinery gene
  LRO88_RS19975 fakBA 3665211..3666056 (-) 846 WP_014481053.1 DegV family protein -
  LRO88_RS19980 degU 3666154..3666843 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  LRO88_RS19985 degS 3666926..3668083 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  LRO88_RS19990 yvyE 3668300..3668953 (+) 654 WP_003227979.1 YigZ family protein -
  LRO88_RS19995 tagV 3668953..3670128 (+) 1176 WP_072173456.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  LRO88_RS20000 tagO 3670201..3671277 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=635333 LRO88_RS19980 WP_014481054.1 3666154..3666843(-) (degU) [Bacillus subtilis strain NIB353]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=635333 LRO88_RS19980 WP_014481054.1 3666154..3666843(-) (degU) [Bacillus subtilis strain NIB353]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996