Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N8E86_RS09430 Genome accession   NZ_CP104914
Coordinates   2020626..2021141 (-) Length   171 a.a.
NCBI ID   WP_264255720.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AG21-0333     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2015626..2026141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E86_RS11610 - 2015902..2016195 (+) 294 Protein_1809 transposase -
  N8E86_RS09405 (N8E86_09405) - 2016213..2016890 (+) 678 WP_264255715.1 IS3 family transposase -
  N8E86_RS09410 (N8E86_09410) - 2016948..2017238 (+) 291 Protein_1811 transposase -
  N8E86_RS09415 (N8E86_09415) - 2017287..2019125 (-) 1839 WP_264255717.1 DUF262 domain-containing HNH endonuclease family protein -
  N8E86_RS11615 (N8E86_09420) - 2019397..2019678 (+) 282 WP_264255718.1 alpha/beta hydrolase -
  N8E86_RS09425 (N8E86_09425) - 2019675..2020463 (+) 789 WP_264255719.1 alpha/beta hydrolase -
  N8E86_RS09430 (N8E86_09430) ssb 2020626..2021141 (-) 516 WP_264255720.1 single-stranded DNA-binding protein Machinery gene
  N8E86_RS09435 (N8E86_09435) uvrA 2021319..2024147 (+) 2829 WP_264255721.1 excinuclease ABC subunit UvrA Machinery gene
  N8E86_RS09440 (N8E86_09440) - 2024293..2025339 (+) 1047 WP_017805687.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19141.03 Da        Isoelectric Point: 5.0100

>NTDB_id=635140 N8E86_RS09430 WP_264255720.1 2020626..2021141(-) (ssb) [Avibacterium paragallinarum strain AG21-0333]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWMDKNTGERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRGQGGYSAQGGYAQQGSNQYAQPAQPSYQAPQQQAAARPSSPPTPMV
DDNFEDDNIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=635140 N8E86_RS09430 WP_264255720.1 2020626..2021141(-) (ssb) [Avibacterium paragallinarum strain AG21-0333]
ATGGCTGGAGTAAATAAAGTTATTATTGTTGGAAATCTAGGAAATGATCCGGAAATTCGTACAATGCCAAATGGGGAAGC
CGTTGCGAACATTAGTGTTGCGACCAGTGAAAGCTGGATGGATAAAAATACGGGAGAACGCCGTGAGATTACCGAATGGC
ATCGTATTGTGTTTTATCGTCGCCAAGCAGAAGTCGCTGGCGAATATTTACGCAAAGGCTCAAAAGTTTATGTTGAAGGG
CGTTTAAGAACTCGCAAATGGCAAGATCAAAATGGCCAAGATCGTTATACAACAGAAATTCAAGGCGATGTTTTGCAAAT
GTTAGATAGCCGTGCAGATAGAGGACAAGGTGGGTATTCAGCTCAAGGGGGATATGCTCAACAAGGCAGCAACCAATATG
CACAACCCGCACAACCGAGCTATCAAGCTCCTCAACAACAGGCTGCAGCCCGCCCTTCATCACCACCTACTCCTATGGTT
GATGATAATTTCGAGGACGATAATATCCCATTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.582

100

0.719
  ssb Vibrio cholerae strain A1552

59.669

100

0.632
  ssb Neisseria meningitidis MC58

48.023

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.497