Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   N8E86_RS09435 Genome accession   NZ_CP104914
Coordinates   2021319..2024147 (+) Length   942 a.a.
NCBI ID   WP_264255721.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AG21-0333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2016319..2029147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E86_RS09410 (N8E86_09410) - 2016948..2017238 (+) 291 Protein_1811 transposase -
  N8E86_RS09415 (N8E86_09415) - 2017287..2019125 (-) 1839 WP_264255717.1 DUF262 domain-containing HNH endonuclease family protein -
  N8E86_RS11615 (N8E86_09420) - 2019397..2019678 (+) 282 WP_264255718.1 alpha/beta hydrolase -
  N8E86_RS09425 (N8E86_09425) - 2019675..2020463 (+) 789 WP_264255719.1 alpha/beta hydrolase -
  N8E86_RS09430 (N8E86_09430) ssb 2020626..2021141 (-) 516 WP_264255720.1 single-stranded DNA-binding protein Machinery gene
  N8E86_RS09435 (N8E86_09435) uvrA 2021319..2024147 (+) 2829 WP_264255721.1 excinuclease ABC subunit UvrA Machinery gene
  N8E86_RS09440 (N8E86_09440) - 2024293..2025339 (+) 1047 WP_017805687.1 rod shape-determining protein -
  N8E86_RS09445 (N8E86_09445) mreC 2025412..2026449 (+) 1038 WP_264255724.1 rod shape-determining protein MreC -
  N8E86_RS09450 (N8E86_09450) mreD 2026449..2026931 (+) 483 WP_035687802.1 rod shape-determining protein MreD -
  N8E86_RS09455 (N8E86_09455) hutZ 2026958..2027476 (-) 519 WP_013747034.1 heme utilization protein HutZ -
  N8E86_RS09460 (N8E86_09460) hutX 2027470..2027979 (-) 510 WP_264255730.1 heme utilization cystosolic carrier protein HutX -

Sequence

Protein


Download         Length: 942 a.a.        Molecular weight: 104166.05 Da        Isoelectric Point: 7.5684

>NTDB_id=635141 N8E86_RS09435 WP_264255721.1 2021319..2024147(+) (uvrA) [Avibacterium paragallinarum strain AG21-0333]
MEKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPNHHIPLAAQTISQMVDKVLALPEESRMMLLAPVVKDRKG
EHIKILEHIAAQGYLRARIDGEICDLSDPPTLELQKKHTIEVVVDRFKIRPDLATRLAESFETALELSGGTAVVASMDDP
QAEEFLFSANFACPHCGYSVPELEPRLFSFNNPAGACPTCDGLGVQQYFDEKRVVQNPSISLANGAIKGWDRRNFYYYQM
LTSLAKHYGFDVESPFEKLPKKIQHIILHGSGKEEIEFQYMNDRGDVVLRRHSFEGILNNMARRYKETESVAVREELAKN
ISTRPCKDCDGSRLRQEARNVFIGDINLPDVSEKSIGEAFNFVDSLTLSGQRAQIADKILKEIKERLQFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNTVIVVEHDEDAILAADHIIDI
GPGAGVHGGSVVAQGTAQEIMQNPNSLTGKFLSGKEKIKIPKKRTALDKEKILKLKGASGNNLKNVNLDIPVGLFTCVTG
VSGSGKSTLINDTLFPLAQSALNRAENAQAAPHKSIQGLEFFDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTINQVLDMTVEEAREFF
DAIPQIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLDVLHRLRD
QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQIIATGTPEQVAKVKGSHTARFLKQILKK

Nucleotide


Download         Length: 2829 bp        

>NTDB_id=635141 N8E86_RS09435 WP_264255721.1 2021319..2024147(+) (uvrA) [Avibacterium paragallinarum strain AG21-0333]
ATGGAAAAAATAGAAGTAAGAGGGGCGAGAACCCACAATTTAAAAAATATTAATTTAACCATCCCCCGCGATAAATTGAT
TGTGATCACTGGGCTATCTGGTTCAGGCAAATCCTCTCTAGCCTTTGACACCCTATATGCAGAAGGACAACGCCGTTATG
TAGAATCCCTGTCGGCTTATGCACGTCAATTTTTATCGTTGATGGAAAAACCAGACGTGGATCATATTGAAGGTTTATCC
CCCGCGATTTCTATTGAACAAAAATCAACATCTCACAACCCACGTTCTACAGTGGGAACAATCACGGAAATTCATGATTA
TTTGCGTTTATTATTTGCCCGTGTGGGGGAGCCTCGCTGCCCGAATCACCATATCCCTTTGGCAGCACAAACAATTAGCC
AAATGGTAGATAAAGTATTGGCATTACCTGAAGAAAGCCGAATGATGTTACTTGCCCCTGTAGTAAAAGATCGCAAAGGG
GAGCATATTAAGATTTTGGAACACATTGCGGCACAAGGCTATCTTCGAGCCAGAATTGACGGTGAAATCTGTGATTTATC
GGATCCTCCTACACTAGAATTACAGAAAAAACATACAATCGAAGTGGTGGTAGATCGCTTTAAAATTCGTCCAGATCTTG
CCACGCGTTTAGCTGAATCTTTTGAAACCGCATTAGAACTTTCTGGTGGTACTGCCGTAGTGGCAAGTATGGATGATCCG
CAAGCTGAAGAGTTCCTTTTTTCTGCTAACTTTGCCTGTCCGCATTGTGGTTATTCTGTGCCAGAACTTGAACCTCGCTT
ATTCTCTTTTAATAACCCTGCAGGCGCTTGTCCAACTTGTGATGGTTTAGGTGTACAACAATATTTTGATGAAAAACGAG
TGGTTCAAAACCCAAGTATTTCTCTAGCTAACGGGGCGATTAAGGGTTGGGATCGACGTAATTTTTATTATTATCAGATG
CTCACCTCATTGGCAAAACATTATGGTTTTGATGTGGAAAGCCCATTCGAAAAATTACCCAAAAAAATTCAACACATTAT
TCTGCACGGTTCCGGCAAAGAAGAAATTGAATTCCAATATATGAATGATCGTGGTGATGTTGTGCTACGCCGCCATAGTT
TTGAGGGCATTCTCAATAATATGGCTCGCCGTTATAAAGAAACGGAGTCTGTCGCTGTGCGTGAAGAATTAGCGAAAAAT
ATCAGTACTCGCCCTTGTAAAGACTGCGATGGCTCTCGCTTACGTCAAGAAGCACGCAATGTATTTATTGGGGACATAAA
TCTCCCAGATGTTTCCGAAAAAAGTATTGGTGAAGCCTTTAATTTTGTGGATAGCCTAACATTAAGCGGACAACGTGCCC
AAATTGCCGACAAAATTTTGAAAGAAATCAAAGAACGGTTGCAATTTTTAGTCAATGTTGGCTTAAATTACCTCTCCCTT
TCCCGCTCCGCAGAAACCCTTTCTGGCGGTGAAGCACAACGTATTCGCCTCGCAAGCCAAATCGGAGCTGGGTTAGTGGG
GGTGATGTATGTACTTGATGAGCCTTCCATTGGCTTACATCAACGCGATAATGAGCGTTTGCTTAATACCTTGATTCATC
TAAGAAACTTAGGGAATACAGTGATTGTGGTAGAACACGATGAAGATGCTATTCTTGCTGCGGATCATATTATTGATATT
GGACCAGGTGCGGGCGTACACGGCGGTAGCGTAGTGGCGCAAGGTACGGCGCAAGAAATTATGCAAAATCCAAATTCACT
GACGGGGAAATTCTTATCCGGGAAAGAAAAAATAAAAATTCCCAAAAAACGCACCGCACTTGATAAAGAAAAAATCTTAA
AACTCAAAGGTGCTTCAGGCAATAATCTGAAAAATGTCAATTTAGACATTCCAGTGGGCTTGTTTACTTGTGTAACAGGC
GTATCGGGGTCGGGTAAATCTACGCTGATTAACGATACCCTATTCCCACTGGCACAAAGTGCTTTAAACCGTGCGGAAAA
TGCGCAAGCTGCACCACATAAATCCATTCAAGGATTAGAATTTTTTGACAAAGTGATTGATATTGACCAAAGCCCGATTG
GACGTACACCGCGTTCAAATCCTGCTACTTATACGGGATTATTCACCCCTATCCGCGAATTATTCGCTGGTGTACCAGAA
GCTCGAGCAAGAGGCTACAATCCCGGTCGATTTAGCTTTAACGTGCGAGGCGGACGCTGTGAAGCCTGTCAAGGAGATGG
GGTAATCAAAGTAGAAATGCACTTTTTACCTGATGTTTATGTCCCTTGTGATCAATGCAAAGGAAAACGTTACAATCGTG
AAACCTTAGAAATTCGTTACAAAGGCAAAACGATTAACCAAGTGTTGGATATGACAGTGGAAGAAGCTCGTGAGTTTTTT
GATGCTATCCCACAAATTGCTCGCAAATTGCAAACCTTAATGGATGTTGGGCTTTCTTATATCCGTTTAGGACAATCTTC
CACCACGCTTTCTGGTGGTGAAGCACAACGCGTAAAATTAGCCACTGAGCTGTCTAAACGAGATACGGGAAAAACATTGT
ATATTCTTGACGAGCCAACAACAGGTTTGCATTTTGCCGATATTAAACAACTGCTTGATGTCTTGCACCGCTTGCGTGAC
CAAGGTAATACGATTGTGGTGATTGAGCATAATTTAGATGTTATCAAAACTGCAGATTGGATTGTAGATCTTGGGCCTGA
AGGTGGTAGTGGAGGCGGGCAAATCATTGCGACAGGCACGCCAGAACAAGTTGCGAAGGTTAAAGGTTCGCATACAGCAC
GCTTCTTAAAGCAAATACTCAAAAAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

58.191

99.788

0.581
  uvrA Streptococcus pneumoniae TIGR4

58.191

99.788

0.581
  uvrA Streptococcus pneumoniae D39

58.191

99.788

0.581