Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   CSB63_RS09845 Genome accession   NZ_CP089060
Coordinates   1851826..1853061 (+) Length   411 a.a.
NCBI ID   WP_255135971.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1846826..1858061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS09815 (CSB63_2072) - 1847293..1849899 (+) 2607 WP_134973548.1 YfhO family protein -
  CSB63_RS09835 (CSB63_2073) - 1850443..1851126 (-) 684 WP_011226711.1 YoaK family protein -
  CSB63_RS09840 (CSB63_2074) rlmH 1851142..1851621 (-) 480 WP_002952297.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  CSB63_RS09845 (CSB63_2075) htrA 1851826..1853061 (+) 1236 WP_255135971.1 S1C family serine protease Regulator
  CSB63_RS09850 (CSB63_2076) spo0J 1853127..1853894 (+) 768 WP_002952299.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 411 a.a.        Molecular weight: 42958.27 Da        Isoelectric Point: 4.7740

>NTDB_id=634897 CSB63_RS09845 WP_255135971.1 1851826..1853061(+) (htrA) [Streptococcus thermophilus strain CH8]
MKKFNWKKIVAPIAMLIIGLLGGLLGAFILLTAAGVSFTNTTDTRVKTAKTVYTNITDTTKAVKKVQNAVVSVINYQEGS
SSDSLNDLYGRIFGGGDSSDSSQENSKDSDGLQVAGEGSGVIYKKDGKEAYIVTNNHVVDGAKKLEIMLSDGSKITGELV
GKDTYSDLAVVKVSSDKITTVAEFADSNSLTVGEKAIAIGSPLGTEYANSVTEGIVSSLSRTITMQNDNGETVSTNAIQT
DAAINPGNSGGALVNIEGQVIGINSSKISSTSAVAGSAVEGMGFAIPSNDVVEIINQLEKDGKVTRPALGISIADLNSLS
SSATSKLDLPDEVKSGVVVGSVQKGMPADGKLQEYDVITEIDGKKISSKTDIQTNLYSHSIGDTIKVTFYRGKDKKTVDL
KLTKSTEDISD

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=634897 CSB63_RS09845 WP_255135971.1 1851826..1853061(+) (htrA) [Streptococcus thermophilus strain CH8]
ATGAAAAAATTTAACTGGAAGAAAATAGTCGCGCCAATTGCAATGCTAATTATTGGCTTACTAGGTGGTTTACTTGGTGC
CTTTATCCTACTAACAGCAGCCGGGGTATCTTTTACCAATACAACAGATACTCGAGTAAAAACGGCTAAGACCGTCTACA
CCAATATAACAGATACAACTAAGGCTGTTAAGAAAGTACAAAATGCCGTTGTTTCTGTCATCAATTATCAAGAAGGTTCA
TCTTCAGATTCTCTAAATGACCTTTATGGCCGTATCTTTGGCGGAGGGGACAGTTCTGATTCTAGCCAAGAAAATTCAAA
AGATTCAGATGGCCTGCAGGTCGCTGGTGAAGGTTCTGGAGTCATCTATAAAAAAGATGGTAAAGAAGCCTACATCGTAA
CCAATAACCACGTTGTCGATGGGGCTAAAAAACTTGAAATCATGCTTTCGGATGGTTCGAAAATTACTGGTGAACTTGTT
GGTAAAGACACTTACTCTGACCTAGCAGTTGTCAAAGTATCTTCAGATAAAATAACAACTGTTGCAGAATTTGCAGACTC
AAACTCCCTTACTGTTGGTGAAAAAGCAATTGCTATTGGTAGCCCACTTGGTACCGAATACGCCAACTCAGTAACAGAAG
GAATCGTTTCTAGCCTTAGCCGTACTATAACGATGCAAAACGATAATGGTGAAACTGTATCAACAAACGCTATCCAAACA
GATGCAGCCATTAACCCTGGTAACTCTGGTGGTGCCCTAGTCAATATTGAAGGACAAGTTATCGGTATTAACTCAAGTAA
AATTTCATCAACGTCTGCAGTCGCTGGTAGTGCTGTTGAAGGTATGGGGTTTGCCATTCCATCAAACGATGTTGTTGAAA
TCATCAATCAATTAGAAAAAGATGGTAAAGTTACACGACCAGCACTAGGGATCTCAATAGCAGATCTTAATAGCCTTTCT
AGCAGCGCAACTTCTAAATTAGATTTACCAGATGAGGTCAAATCCGGTGTTGTTGTCGGTAGTGTTCAGAAAGGTATGCC
AGCTGACGGTAAACTTCAAGAATATGATGTTATCACTGAGATTGATGGTAAGAAAATCAGCTCAAAAACTGATATTCAAA
CCAATCTTTACAGCCATAGTATCGGAGATACTATCAAGGTAACCTTCTATCGTGGTAAAGATAAGAAAACTGTAGATCTT
AAATTAACAAAATCTACAGAAGACATATCTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.787

98.054

0.606

  htrA Streptococcus gordonii str. Challis substr. CH1

57.282

100

0.574

  htrA Streptococcus mitis NCTC 12261

53.79

99.513

0.535

  htrA Streptococcus pneumoniae TIGR4

53.545

99.513

0.533

  htrA Streptococcus pneumoniae D39

53.545

99.513

0.533

  htrA Streptococcus pneumoniae Rx1

53.545

99.513

0.533

  htrA Streptococcus pneumoniae R6

53.545

99.513

0.533