NTDB

Overview

Name	covR	Type	Regulator
Locus tag	CSB63_RS01645	Genome accession	NZ_CP089060
Coordinates	294349..295038 (+)	Length	229 a.a.
NCBI ID	WP_002949638.1	Uniprot ID	A0A060BFD8
Organism	Streptococcus thermophilus strain CH8
Function	repress comR expression (predicted from homology) Competence regulation

Genomic Context

Location: 289349..300038

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSB63_RS01620	-	290315..290485 (+)	171	Protein_269	ascorbate 6-phosphate lactonase	-
CSB63_RS01625 (CSB63_0297)	-	290502..291173 (-)	672	WP_002946492.1	potassium channel family protein	-
CSB63_RS01630 (CSB63_0298)	-	291213..292577 (-)	1365	WP_134973078.1	TrkH family potassium uptake protein	-
CSB63_RS01635 (CSB63_0299)	rsmG	292647..293360 (-)	714	WP_002946490.1	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	-
CSB63_RS01640 (CSB63_0300)	-	293657..294193 (+)	537	WP_002946488.1	DUF177 domain-containing protein	-
CSB63_RS01645 (CSB63_0301)	covR	294349..295038 (+)	690	WP_002949638.1	response regulator transcription factor	Regulator
CSB63_RS01650 (CSB63_0302)	covS	295035..296552 (+)	1518	WP_002949640.1	HAMP domain-containing sensor histidine kinase	Regulator
CSB63_RS01655 (CSB63_0303)	nrdR	296675..297154 (+)	480	WP_002949642.1	transcriptional regulator NrdR	-
CSB63_RS01660 (CSB63_0304)	-	297151..298326 (+)	1176	WP_100262514.1	DnaD domain protein	-
CSB63_RS01665 (CSB63_0305)	dnaI	298330..299232 (+)	903	WP_084828487.1	primosomal protein DnaI	-

Sequence

Protein

Download Length: 229 a.a. Molecular weight: 26655.77 Da Isoelectric Point: 4.7059

                                >NTDB_id=634853 CSB63_RS01645 WP_002949638.1 294349..295038(+) (covR) [Streptococcus thermophilus strain CH8]

MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFEVTRRLQQEKDTYIMMMT

ARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDIEATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKRE

FDLLNTLLSNMNQVMTREELLLQVWKYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIRER

Nucleotide

Download Length: 690 bp

                                >NTDB_id=634853 CSB63_RS01645 WP_002949638.1 294349..295038(+) (covR) [Streptococcus thermophilus strain CH8]

ATGAGCAAACGCATTTTGATTGTTGAAGATGAGAGAAACCTTGCTCGTTTTGTCTCTCTTGAACTTCAACACGAAGGATA

CGACGTTGTGACAGCGGACAACGGACGCGAAGGACTTGAAATGGCACTTGAGAAAGATTTCGATCTTATTCTCTTGGACC

TTATGTTGCCTGAGATGGACGGTTTCGAAGTGACACGTCGTCTCCAACAAGAAAAAGATACTTATATTATGATGATGACA

GCTCGCGACTCAATCATGGATATTGTTGCTGGTTTGGATCGTGGAGCTGATGACTATATTATAAAACCATTTGCGATTGA

AGAACTGTTGGCACGTATTCGTGCAACCTTCCGTCGTCAAGATATCGAAGCTACTAAGAAGGCACCAGCTAAAGCGTCAA

CCTATCGCGATTTAAAATTGGATGTTCAAAACCGTGCAGTTGTTCGCGGTGATGAGGTAATTCCATTGACAAAACGTGAG

TTTGATTTGTTGAACACACTTTTAAGTAATATGAACCAAGTAATGACCCGTGAGGAACTCTTGCTTCAAGTCTGGAAATA

TGATGACGTAATTGAAACAAACGTTGTAGATGTTTATATTCGTTACTTACGTGGGAAAATCGACATTCCAGGTAAGGAAT

CATACATTCAAACAGTACGAGGGATGGGTTACGTTATCCGTGAAAGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A060BFD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
covR	Streptococcus salivarius strain HSISS4	96.07	100	0.961
covR	Lactococcus lactis subsp. lactis strain DGCC12653	67.544	99.563	0.672
vicR	Streptococcus mutans UA159	45.259	100	0.459
micA	Streptococcus pneumoniae Cp1015	43.913	100	0.441

Detailed information NTG0634853