Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CSB63_RS01485 Genome accession   NZ_CP089060
Coordinates   264931..265500 (+) Length   189 a.a.
NCBI ID   WP_065972905.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 263538..264713 264931..265500 flank 218


Gene organization within MGE regions


Location: 263538..265500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS01480 (CSB63_0266) - 263538..264713 (+) 1176 WP_159341049.1 IS256-like element IS1191 family transposase -
  CSB63_RS01485 (CSB63_0268) comA 264931..265500 (+) 570 WP_065972905.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20681.65 Da        Isoelectric Point: 6.8724

>NTDB_id=634852 CSB63_RS01485 WP_065972905.1 264931..265500(+) (comA) [Streptococcus thermophilus strain CH8]
MGQSSSGKTTLAKISSGYYTKSSGHVSLDKASISQAELRQLVTYVPQQTYVFMGTILENLLLGLEGEVDEHLILKVCEQA
DILADIQKMPLGFQTQVSEDGGLSGGQKQRLAIARALLSNQPILIFDEATSGLDRETESRVMANLSKLTRTMIFIAHRSS
VYQHVSRVVTMANGKLEAASPNFNPFQFI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=634852 CSB63_RS01485 WP_065972905.1 264931..265500(+) (comA) [Streptococcus thermophilus strain CH8]
ATGGGTCAGAGTAGTTCTGGGAAAACGACTTTAGCGAAGATTTCGTCAGGTTATTACACAAAATCTAGTGGTCATGTAAG
CCTAGACAAAGCTTCTATTAGCCAAGCGGAGTTGCGCCAGTTGGTGACCTATGTTCCACAACAGACCTATGTCTTTATGG
GAACAATATTAGAAAATTTATTGTTAGGCCTTGAAGGAGAAGTTGATGAGCATCTTATTCTGAAAGTCTGTGAACAAGCC
GATATTTTGGCTGATATTCAAAAGATGCCCCTAGGTTTTCAGACCCAAGTATCTGAAGATGGAGGTCTGTCTGGCGGTCA
AAAACAAAGATTAGCTATAGCAAGGGCTCTCTTGTCCAATCAACCAATCTTGATTTTTGATGAAGCTACAAGTGGTCTGG
ACAGGGAAACTGAAAGTAGAGTAATGGCCAATCTTTCTAAACTGACACGAACAATGATTTTCATTGCTCACCGTAGCAGT
GTCTACCAACATGTCAGTCGTGTAGTGACTATGGCAAATGGGAAGCTTGAAGCAGCTAGTCCCAACTTCAATCCATTCCA
GTTCATTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(1-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

50.556

95.238

0.481
  comA Streptococcus pneumoniae Rx1

50

95.238

0.476
  comA Streptococcus pneumoniae D39

50

95.238

0.476
  comA Streptococcus pneumoniae R6

50

95.238

0.476
  comA Streptococcus mitis NCTC 12261

49.444

95.238

0.471
  comA Streptococcus pneumoniae TIGR4

49.444

95.238

0.471
  comA Streptococcus gordonii str. Challis substr. CH1

48.889

95.238

0.466
  comA/nlmT Streptococcus mutans UA159

46.667

95.238

0.444