Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CSB63_RS01470 Genome accession   NZ_CP089060
Coordinates   262606..263001 (+) Length   131 a.a.
NCBI ID   WP_252989162.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CH8     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 263538..264713 262606..263001 flank 537


Gene organization within MGE regions


Location: 262606..264713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB63_RS01470 comA 262606..263001 (+) 396 WP_252989162.1 ABC transporter transmembrane domain-containing protein Regulator
  CSB63_RS01475 (CSB63_0265) comA 263085..263453 (+) 369 WP_255136094.1 ABC transporter transmembrane domain-containing protein Regulator
  CSB63_RS01480 (CSB63_0266) - 263538..264713 (+) 1176 WP_159341049.1 IS256-like element IS1191 family transposase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14792.58 Da        Isoelectric Point: 7.1587

>NTDB_id=634850 CSB63_RS01470 WP_252989162.1 262606..263001(+) (comA) [Streptococcus thermophilus strain CH8]
MTLVNIIGSYYLQSIIDRLIPQEDYSLLIVISLGLCIAYLAQQVFTFFKDYLLHRLGNYLSISVILPYIKHVLSLPISFF
GSRRTGEITSRFRDANTIIDALASTILSIFLDVTIVITLAVALILQTVLFF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=634850 CSB63_RS01470 WP_252989162.1 262606..263001(+) (comA) [Streptococcus thermophilus strain CH8]
GTGACCCTTGTTAATATTATTGGTTCTTATTATTTGCAGTCTATTATAGACCGCTTGATTCCTCAAGAAGACTATTCTCT
TCTGATTGTGATTTCTCTCGGTTTGTGCATCGCCTATCTAGCCCAACAAGTCTTCACTTTTTTCAAAGATTATCTTCTAC
ATCGATTGGGTAATTACTTGTCCATTTCTGTTATCCTTCCTTATATTAAACATGTCCTTTCTTTGCCCATTAGTTTCTTC
GGTTCACGTCGTACTGGTGAAATCACGTCACGTTTTAGAGATGCCAACACCATTATCGATGCTCTAGCTTCAACAATCTT
ATCGATTTTCCTAGATGTCACCATTGTGATAACTTTAGCTGTCGCCCTTATTTTACAAACCGTTCTCTTTTTTTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

61.364

100

0.618
  comA Streptococcus gordonii str. Challis substr. CH1

61.364

100

0.618
  comA Streptococcus pneumoniae Rx1

60.606

100

0.611
  comA Streptococcus pneumoniae D39

60.606

100

0.611
  comA Streptococcus pneumoniae TIGR4

60.606

100

0.611
  comA Streptococcus pneumoniae R6

60.606

100

0.611
  comA Streptococcus mitis SK321

60.606

100

0.611
  comA/nlmT Streptococcus mutans UA159

58.333

100

0.588