Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LSO59_RS01545 Genome accession   NZ_CP089038
Coordinates   328942..330426 (-) Length   494 a.a.
NCBI ID   WP_005001768.1    Uniprot ID   N9DJ20
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 323942..335426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS01520 (LSO59_01515) - 324514..324900 (-) 387 WP_005001754.1 hypothetical protein -
  LSO59_RS01525 (LSO59_01520) - 325016..325414 (+) 399 WP_005001756.1 MAPEG family protein -
  LSO59_RS01530 (LSO59_01525) ppa 325570..326097 (+) 528 WP_004995387.1 inorganic diphosphatase -
  LSO59_RS01535 (LSO59_01530) - 326174..327469 (-) 1296 WP_005001763.1 OprD family outer membrane porin -
  LSO59_RS01540 (LSO59_01535) - 328078..328890 (+) 813 WP_010588817.1 TorF family putative porin -
  LSO59_RS01545 (LSO59_01540) comM 328942..330426 (-) 1485 WP_005001768.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LSO59_RS01550 (LSO59_01545) - 330495..330722 (-) 228 WP_005001770.1 accessory factor UbiK family protein -
  LSO59_RS01555 (LSO59_01550) glnK 330998..331336 (+) 339 WP_004656379.1 P-II family nitrogen regulator -
  LSO59_RS01560 (LSO59_01555) - 331399..332802 (+) 1404 WP_005001773.1 ammonium transporter -
  LSO59_RS01565 (LSO59_01560) nrdR 332919..333386 (+) 468 WP_005001774.1 transcriptional regulator NrdR -
  LSO59_RS01570 (LSO59_01565) ribD 333379..334479 (+) 1101 WP_010588816.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54559.66 Da        Isoelectric Point: 7.8034

>NTDB_id=634720 LSO59_RS01545 WP_005001768.1 328942..330426(-) (comM) [Acinetobacter ursingii strain RIVM_C011601]
MSFAKILTRGVLGLHAPLIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLAIALGILIASGQLPEACTDGFEFIGELALDGHLRPVTSALSIAMACQQAQRQLFIPKANLEQVEQLSEFQLYSANHL
KQVCEHFLGVQPIPAHITQNNNHTQAYKYDLIDVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QENLEVASIYSIANNQHHFGLRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIQRYQNRISGPLLDRIDLHIDVPPLQANELQNNVPVE
DSMTVRKRVMSAYDSQIQRQQKANFALSPQELEQYAVLDAHAEKMMEVAQQRMNLSARSYHRILRVARTIADLSHSPNIE
ITHLSEALSYRQKI

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=634720 LSO59_RS01545 WP_005001768.1 328942..330426(-) (comM) [Acinetobacter ursingii strain RIVM_C011601]
ATGTCTTTTGCAAAGATTTTAACTCGCGGGGTATTAGGGTTACATGCTCCTTTAATTGAGGTCGAAGTTCATTTAAGTCA
GGGGCTTCCCTCACTCACGATCGTTGGGCTAGCAGAAGCAGCGGTACGTGAAAGTAAGGATCGAGTACGCTCTGCGATTA
TTAACAGTGGTTTTCAGTTTCCAACCAAACGCCTGACCATTAATCTGGCACCAGCGGATCTGCCGAAAGATGGATCCCGT
CTTGATCTCGCCATTGCTTTAGGGATTCTGATTGCCTCTGGACAATTGCCTGAAGCCTGTACAGATGGATTTGAATTTAT
TGGAGAATTGGCTTTGGATGGGCATTTAAGACCCGTCACCAGCGCTCTAAGCATAGCGATGGCGTGTCAACAAGCGCAAC
GTCAGCTTTTTATTCCTAAGGCGAATCTTGAACAGGTGGAACAGCTTTCTGAATTTCAACTTTATTCAGCCAACCACTTA
AAACAGGTCTGTGAACATTTTCTGGGAGTACAGCCTATTCCTGCTCATATCACTCAAAATAACAATCATACTCAAGCTTA
TAAATATGATCTGATTGATGTAAAAGGACAATTACGGCCACGTCGTGCACTTGAAATTGCCGCAGCTGGAGGACACTCTT
TATTATTTAAGGGGCCACCGGGTACTGGTAAAACTTTGTTAGCTTCGCGTCTACCTAGCATTTTGCCGCCGTTATCAACA
CAGGAAAATCTTGAAGTCGCCAGTATCTACTCGATTGCCAATAATCAGCATCATTTTGGTTTACGTCCTTTTCGAGCACC
GCATCACACGGCTTCTGCGATTGCATTGGTAGGTGGAGGCTCACATCCTAAACCCGGAGAAATTACACTGGCTCATTTAG
GCGTTTTATTTTTAGATGAGTTACCAGAATTTGATCGCAAAGTGCTTGAAGTATTACGACAACCACTTGAATCTAAAGAA
ATCGTGATTTCACGTGCATCTCGACAAATTACCTTTCCTGCTAATTTTCAGTTGATTGCAGCAATGAATCCATGTCCATG
TGGCTATGCATTTAATCAGGATAGTCGCTGCCAGTGTTCGCCTGAATCAATTCAACGTTATCAAAATCGAATTTCAGGAC
CTTTGCTGGATCGAATCGATTTACATATTGATGTTCCTCCATTACAAGCCAATGAATTGCAAAATAATGTACCTGTAGAA
GATTCTATGACTGTACGTAAACGTGTGATGAGTGCTTATGACTCTCAAATTCAGCGTCAACAAAAAGCAAATTTTGCACT
TTCACCCCAAGAATTAGAACAATATGCGGTACTGGATGCGCATGCTGAAAAAATGATGGAAGTTGCGCAACAACGTATGA
ATTTATCGGCGCGCTCTTATCATCGTATTTTACGTGTTGCACGTACTATTGCAGATTTATCACACAGTCCTAATATTGAA
ATTACACATTTATCAGAAGCGTTGTCATATCGACAAAAGATTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9DJ20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.613

100

0.518
  comM Glaesserella parasuis strain SC1401

51

100

0.516
  comM Vibrio campbellii strain DS40M4

50.909

100

0.51
  comM Haemophilus influenzae Rd KW20

49.602

100

0.504
  comM Legionella pneumophila str. Paris

48.413

100

0.494
  comM Legionella pneumophila strain ERS1305867

48.413

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.849

100

0.447