Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LRK52_RS16155 Genome accession   NZ_CP088980
Coordinates   3487612..3489105 (-) Length   497 a.a.
NCBI ID   WP_027484164.1    Uniprot ID   -
Organism   Rhodanobacter denitrificans strain FW104-R5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3482612..3494105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRK52_RS16145 (LRK52_16145) aceA 3484346..3485641 (+) 1296 WP_027484166.1 isocitrate lyase -
  LRK52_RS16150 (LRK52_16150) - 3485744..3487540 (-) 1797 WP_027484165.1 sodium:proton antiporter -
  LRK52_RS16155 (LRK52_16155) comM 3487612..3489105 (-) 1494 WP_027484164.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LRK52_RS16160 (LRK52_16160) - 3489255..3489515 (-) 261 WP_015448938.1 accessory factor UbiK family protein -
  LRK52_RS16165 (LRK52_16165) glnK 3489696..3490034 (+) 339 WP_007513650.1 P-II family nitrogen regulator -
  LRK52_RS16170 (LRK52_16170) - 3490491..3492911 (+) 2421 WP_027490450.1 ribonucleoside-diphosphate reductase subunit alpha -
  LRK52_RS16175 (LRK52_16175) - 3493010..3493306 (-) 297 WP_007513647.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53509.43 Da        Isoelectric Point: 8.0275

>NTDB_id=634390 LRK52_RS16155 WP_027484164.1 3487612..3489105(-) (comM) [Rhodanobacter denitrificans strain FW104-R5]
MSLAVTLSRAQEGIAAPQVMVEVHLSGGLPCTNIVGLPEAAVREARDRVRVAIQNTAFEYPGRRVTVNLAPAELPKDGGR
FDLPIALGILAASGQVPREKLDDCEFLGELALTGSLRGVSGVLPALLRARTRGRRVVVPRANAAEAALVSDVDVRVADTL
AEVCGWLRGAHELSMPVGIPSDGGADGGPDLADVRGQLQARRALEITAVGGHHLLLVGPPGTGKTMLAERLPGILPPLSE
SEALETCAVLSVAGQVTDPKHWRRRPFRAPHHTASAVALVGGGSYPRPGEISLAHNGVLFLDELPEFSRHVLEVLREPME
SGHIVISRAARQSAFPAQFQLVAAMNPCPCGYAGDPRCQCTPDQVQRYRARISGPLLDRIDLCVEVPPVPLAELGTPRNA
RDEDSATVRVRVLKARRQSLMRAGRPNAEISTRELERDCALGPAERRWFESALERLGLSARAYHRVLRVARTIADLDGGA
ALLEREHLAEALQYRRF

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=634390 LRK52_RS16155 WP_027484164.1 3487612..3489105(-) (comM) [Rhodanobacter denitrificans strain FW104-R5]
ATGAGTCTTGCCGTCACCCTCAGCCGCGCCCAGGAAGGGATCGCCGCACCGCAGGTGATGGTCGAGGTACACCTTTCCGG
CGGCTTGCCGTGCACCAATATCGTCGGCCTGCCCGAGGCCGCGGTGCGCGAGGCGCGCGATCGCGTGCGGGTGGCGATCC
AGAATACCGCCTTCGAATATCCCGGCCGCCGCGTCACCGTGAATCTGGCGCCGGCCGAGTTGCCCAAGGACGGTGGCCGT
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCAGCGGCCAGGTGCCGCGCGAGAAACTGGACGACTGCGAATTTCT
CGGCGAGCTGGCGCTGACCGGCTCCCTGCGCGGCGTCTCCGGCGTGCTGCCGGCGCTGCTGCGCGCACGCACGCGTGGCC
GGCGGGTGGTGGTGCCGCGCGCGAACGCCGCCGAGGCGGCGCTGGTCTCCGATGTGGATGTGCGCGTGGCCGACACGCTG
GCCGAAGTGTGCGGCTGGTTGCGCGGCGCGCACGAATTGTCGATGCCGGTGGGCATCCCCAGCGACGGCGGCGCCGACGG
CGGCCCGGACCTGGCCGACGTGCGCGGACAGTTGCAGGCGCGGCGCGCGCTGGAGATCACCGCGGTGGGCGGCCACCACC
TGCTGCTGGTGGGACCGCCCGGCACCGGCAAGACCATGCTGGCCGAGCGCCTGCCCGGCATCCTGCCGCCGCTGTCGGAA
TCGGAGGCGCTGGAAACCTGCGCGGTGCTGTCGGTGGCTGGGCAGGTCACTGATCCGAAGCATTGGCGGCGGCGGCCGTT
TCGCGCGCCGCACCACACCGCGTCGGCGGTGGCGCTGGTCGGTGGCGGTTCGTATCCGCGCCCGGGCGAGATTTCGCTGG
CGCACAACGGCGTGCTGTTCCTGGACGAGTTGCCGGAGTTCAGCCGGCACGTGCTGGAGGTGCTGCGCGAGCCGATGGAA
TCGGGCCACATCGTGATCTCGCGGGCGGCGCGGCAGTCGGCGTTCCCGGCCCAGTTCCAGCTGGTCGCGGCGATGAATCC
GTGCCCCTGCGGCTATGCCGGCGACCCGCGCTGCCAGTGCACGCCGGATCAGGTCCAGCGCTACCGCGCACGCATTTCTG
GGCCGCTGCTCGACCGCATCGACCTGTGCGTGGAAGTGCCGCCGGTGCCGCTGGCCGAGCTGGGTACGCCGCGCAACGCA
CGCGACGAGGATTCCGCTACGGTGCGCGTGCGCGTGCTCAAGGCGCGCCGGCAGTCGCTGATGCGCGCGGGCCGGCCGAA
TGCCGAGATCAGCACGCGCGAACTGGAGCGCGACTGCGCGCTGGGGCCGGCCGAGCGCCGCTGGTTCGAATCGGCGCTGG
AGCGGCTGGGCCTGTCCGCGCGCGCCTACCACCGCGTGCTGCGGGTGGCGCGCACGATCGCCGACCTCGACGGCGGCGCC
GCCTTGCTGGAGCGCGAGCACCTGGCCGAGGCGCTGCAATACCGGAGGTTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.758

99.598

0.555
  comM Vibrio campbellii strain DS40M4

54.343

99.598

0.541
  comM Glaesserella parasuis strain SC1401

53.707

100

0.539
  comM Haemophilus influenzae Rd KW20

53.707

100

0.539
  comM Legionella pneumophila str. Paris

51.904

100

0.521
  comM Legionella pneumophila strain ERS1305867

51.904

100

0.521
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.382

100

0.455