Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LRR79_RS02445 Genome accession   NZ_CP088953
Coordinates   598873..600363 (+) Length   496 a.a.
NCBI ID   WP_231758833.1    Uniprot ID   -
Organism   Microbulbifer elongatus strain DSM 6810     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 593873..605363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRR79_RS02415 - 594323..594535 (-) 213 WP_231758829.1 hypothetical protein -
  LRR79_RS02420 - 595227..595565 (-) 339 WP_043319767.1 P-II family nitrogen regulator -
  LRR79_RS02425 - 595679..596938 (-) 1260 WP_231758830.1 ammonium transporter -
  LRR79_RS02430 - 597030..597368 (-) 339 WP_043319769.1 P-II family nitrogen regulator -
  LRR79_RS02435 - 597423..598151 (-) 729 WP_231758831.1 TorF family putative porin -
  LRR79_RS02440 - 598589..598810 (+) 222 WP_231758832.1 accessory factor UbiK family protein -
  LRR79_RS02445 comM 598873..600363 (+) 1491 WP_231758833.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LRR79_RS02450 - 600488..601030 (-) 543 WP_231758834.1 GNAT family N-acetyltransferase -
  LRR79_RS02455 - 601040..601534 (-) 495 WP_231758835.1 GNAT family N-acetyltransferase -
  LRR79_RS02460 - 601552..602007 (-) 456 WP_231758836.1 YaiI/YqxD family protein -
  LRR79_RS02465 - 602007..602240 (-) 234 WP_231758837.1 DUF3565 domain-containing protein -
  LRR79_RS02470 rep 602380..604413 (+) 2034 WP_231758838.1 DNA helicase Rep -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53249.05 Da        Isoelectric Point: 7.8918

>NTDB_id=634124 LRR79_RS02445 WP_231758833.1 598873..600363(+) (comM) [Microbulbifer elongatus strain DSM 6810]
MSLSIAYARAQLGVQAPLVTVETHLANGLPAFNIVGLPEAAVRESRDRVRSAIVNSHFEFPQRRITVNLAPADLPKAGGR
YDLAIALGVLAASGQIPGETLEQFEFIGELALSGSLRPIPGALPAAIACGDSGRTLVIASESAAEAALIKAPVKAASSLL
QVCAQLHGREPLPDALVDDTQEEVLCADLADVRGQLKARRALEVAAAGSHNLLFYGPPGTGKTMLASRLPGILPPLTERE
LIEVAALYSSAGLSRIRQRPFRAPHHSASPTALVGGGSNPRPGEISLAHRGVLFLDEMPEFPRSALEILREPLENGEVRI
SRARAQVTFPADFQLVAAMNPCPCGYLGEARCRCTPDQIDRYRNKLSGPLLDRIDMQVEVASMSAAQLQEAPAGEKSAVV
RERVRNAREIQLQRQGKINGELQGRELDEHCRLGKTESALLRASVEKLGLSARSYHRVLKVARTLADLNQQQEIGTGQIA
EALAYRNLDRKTIVPA

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=634124 LRR79_RS02445 WP_231758833.1 598873..600363(+) (comM) [Microbulbifer elongatus strain DSM 6810]
ATGAGCCTATCCATAGCCTATGCCCGCGCCCAACTGGGAGTGCAGGCGCCACTGGTGACCGTTGAGACCCATCTGGCCAA
CGGATTACCCGCCTTCAATATTGTTGGCCTGCCGGAAGCCGCGGTACGTGAAAGCCGCGACCGGGTGCGCAGCGCCATCG
TCAACAGTCACTTTGAATTCCCCCAGCGGCGCATCACCGTCAATCTGGCCCCGGCAGACCTGCCCAAGGCCGGTGGCCGC
TACGACCTGGCCATCGCCCTCGGCGTACTCGCCGCTTCCGGCCAGATTCCCGGGGAAACCCTCGAGCAGTTTGAATTTAT
TGGCGAGCTGGCGCTTTCGGGCAGCCTGCGCCCCATTCCCGGCGCCCTGCCCGCGGCCATCGCCTGTGGCGACAGCGGAC
GCACCCTGGTGATCGCGTCCGAGTCCGCCGCCGAGGCGGCGCTGATCAAGGCGCCAGTAAAAGCCGCGTCCAGCCTGTTG
CAGGTGTGCGCCCAGCTACACGGGCGCGAACCGCTGCCCGACGCCCTGGTGGACGATACCCAGGAGGAAGTGCTCTGTGC
CGATCTGGCGGACGTGCGCGGCCAGCTCAAGGCACGGCGGGCGCTGGAGGTCGCCGCCGCAGGCAGCCACAATCTGCTTT
TTTACGGTCCACCGGGAACAGGAAAAACCATGCTCGCCAGCCGCCTGCCGGGCATACTGCCACCACTGACCGAGCGCGAG
CTGATTGAAGTGGCGGCCCTCTATTCCAGCGCCGGACTCAGCCGCATTCGCCAGCGCCCGTTTCGCGCGCCCCACCATTC
CGCCTCCCCCACCGCACTGGTGGGTGGGGGTAGCAACCCTCGCCCAGGGGAAATCAGCCTGGCCCATCGCGGTGTGCTGT
TTCTCGATGAAATGCCGGAGTTCCCGCGCTCGGCGCTGGAGATTTTGCGGGAACCACTGGAAAACGGTGAGGTGCGCATT
TCCCGCGCGCGCGCCCAGGTCACCTTCCCTGCAGACTTCCAGCTGGTCGCGGCAATGAACCCCTGCCCCTGTGGCTATCT
CGGCGAAGCACGCTGCCGTTGCACGCCCGATCAGATCGACCGCTACCGCAATAAACTCTCCGGCCCGCTATTGGATCGCA
TTGATATGCAGGTGGAAGTGGCAAGTATGAGCGCGGCACAGTTGCAGGAAGCCCCGGCCGGGGAGAAGTCAGCGGTGGTG
CGGGAGCGGGTGCGCAACGCGCGGGAAATCCAGCTGCAGCGCCAGGGAAAAATCAACGGCGAGCTGCAGGGCAGAGAACT
GGATGAACACTGCCGGCTGGGTAAAACAGAAAGCGCTTTGCTGCGTGCGTCGGTGGAAAAACTCGGTCTGTCTGCGCGCA
GCTATCACCGGGTGTTGAAAGTGGCGCGCACCCTGGCGGATCTGAATCAGCAGCAAGAGATTGGCACCGGGCAGATCGCC
GAAGCGCTGGCCTACCGCAATCTGGATCGTAAAACTATCGTGCCGGCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(394-486)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.709

100

0.55
  comM Haemophilus influenzae Rd KW20

54.076

100

0.548
  comM Vibrio campbellii strain DS40M4

54.309

100

0.546
  comM Glaesserella parasuis strain SC1401

51.297

100

0.518
  comM Legionella pneumophila str. Paris

50.699

100

0.512
  comM Legionella pneumophila strain ERS1305867

50.699

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.46