Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LSQ66_RS00450 Genome accession   NZ_CP088952
Coordinates   92619..94127 (-) Length   502 a.a.
NCBI ID   WP_231767859.1    Uniprot ID   -
Organism   Massilia endophytica strain DM-R-R2A-13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 87619..99127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSQ66_RS00440 (LSQ66_00440) - 91663..92013 (-) 351 WP_231767857.1 DUF1840 domain-containing protein -
  LSQ66_RS00445 (LSQ66_00445) - 92093..92590 (-) 498 WP_231767858.1 hypothetical protein -
  LSQ66_RS00450 (LSQ66_00450) comM 92619..94127 (-) 1509 WP_231767859.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LSQ66_RS00455 (LSQ66_00455) - 94330..96411 (+) 2082 WP_231767860.1 TonB-dependent siderophore receptor -
  LSQ66_RS00460 (LSQ66_00460) - 96486..97067 (+) 582 WP_231767861.1 sigma-70 family RNA polymerase sigma factor -
  LSQ66_RS00465 (LSQ66_00465) - 97072..97287 (+) 216 WP_231767862.1 zf-HC2 domain-containing protein -
  LSQ66_RS00470 (LSQ66_00470) - 97319..98536 (-) 1218 WP_231767863.1 beta-propeller fold lactonase family protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54119.04 Da        Isoelectric Point: 8.6898

>NTDB_id=634093 LSQ66_RS00450 WP_231767859.1 92619..94127(-) (comM) [Massilia endophytica strain DM-R-R2A-13]
MSLAVVKSRALAGMEAPEVSVEVHLANGLPAFHIVGLAETEVKESRDRVRAAIVNAGYDVPQHRITVSLAPADLPKESGR
FDLPIALGILAASQQIPARALERYEFAGELSLTGELRPIRGALAMTFAMRGAGGRAFILPAGNADEAALVRDATIYPAHT
LLEVCRHLCASDDSARLRRHHPAPAAASLQTADFADVKGQQSVKRALEVAAAGSHSVLLVGPPGTGKTMLAARFAGLLPE
MTEDEALEAAAVQSLTGGFAIEDWKLRPFRAPHHTSSGAALVGGGSLPRPGEISLAHCGVLFLDELPEFDRRVLEVLREP
LESGRVTISRAARQSEFPARFQLIAAMNPCPCGYLGHPSGKCSCSADAIMRYQGRISGPLLDRIDIQVEVGPVPPDTLQS
AVEGEASSLIAARVRKAFERQMARQRKSNRHLSTREIDRFCKPDRHGQSTLRHAMLQFHWSARAYHRVLRVARTIADLSG
ADTVGQLHVSEAIQLRRALRAF

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=634093 LSQ66_RS00450 WP_231767859.1 92619..94127(-) (comM) [Massilia endophytica strain DM-R-R2A-13]
ATGAGCCTTGCTGTCGTCAAAAGCCGTGCCCTGGCCGGCATGGAGGCTCCGGAAGTGAGCGTCGAGGTCCATCTGGCCAA
CGGCCTCCCCGCCTTCCATATCGTCGGCCTGGCGGAAACCGAAGTGAAGGAATCGCGCGACCGGGTGCGCGCGGCCATCG
TCAACGCCGGTTACGACGTACCGCAGCACCGCATCACCGTCAGCCTTGCGCCCGCCGACCTGCCGAAGGAGTCCGGACGC
TTCGACCTGCCCATTGCGCTCGGCATACTCGCAGCTTCGCAGCAGATTCCGGCGCGCGCACTGGAACGCTACGAGTTTGC
TGGCGAGCTCTCGCTGACGGGCGAACTGCGGCCGATCCGGGGGGCGCTGGCGATGACCTTCGCCATGCGCGGCGCGGGCG
GGCGCGCCTTCATCCTGCCTGCCGGGAACGCCGATGAAGCGGCCCTGGTGCGCGACGCGACCATCTACCCGGCGCATACG
CTGCTGGAAGTCTGCCGCCACCTTTGCGCCTCGGACGACAGTGCGCGGCTGCGGCGCCATCATCCGGCCCCTGCCGCCGC
CAGCCTGCAGACAGCCGATTTTGCCGATGTGAAGGGACAGCAGAGCGTAAAGCGTGCGCTCGAAGTGGCGGCAGCGGGAT
CGCATTCGGTCCTGCTGGTCGGCCCACCCGGCACGGGCAAGACCATGCTGGCGGCGCGCTTCGCGGGACTGCTGCCGGAG
ATGACGGAGGACGAGGCGCTGGAGGCCGCAGCCGTGCAATCGCTGACGGGCGGCTTCGCCATCGAGGACTGGAAGCTGCG
GCCCTTCCGCGCGCCGCATCACACCTCCTCCGGCGCGGCCCTCGTGGGAGGAGGCAGCCTGCCGCGTCCCGGCGAGATCT
CGCTCGCGCACTGCGGCGTGCTGTTCCTCGACGAGCTGCCCGAGTTCGACCGCCGCGTGCTCGAAGTGCTGCGCGAGCCG
CTGGAATCCGGCCGCGTCACCATTTCGCGCGCCGCACGCCAGTCCGAATTCCCTGCGCGCTTCCAGCTGATCGCAGCCAT
GAATCCCTGCCCCTGCGGCTACCTCGGCCACCCCTCCGGAAAATGCAGTTGTTCAGCGGACGCCATCATGCGCTACCAGG
GCCGGATCTCCGGGCCGCTGCTGGACCGCATCGATATCCAGGTCGAAGTCGGCCCGGTGCCGCCCGATACCCTGCAGTCG
GCAGTGGAAGGCGAAGCCTCCTCCCTCATCGCAGCCCGGGTACGCAAGGCCTTCGAGCGGCAGATGGCACGCCAGCGCAA
GAGCAACCGCCATCTGAGCACGCGCGAGATCGACCGCTTCTGCAAGCCGGACCGGCATGGACAATCCACCCTGCGCCACG
CCATGCTGCAGTTCCACTGGTCGGCGCGCGCCTATCACCGCGTGCTGCGTGTCGCCCGCACCATCGCCGACCTGAGCGGC
GCCGACACCGTCGGCCAGCTTCACGTTTCGGAAGCGATCCAGCTGCGGCGGGCGCTCAGGGCTTTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.61

99.203

0.522
  comM Vibrio campbellii strain DS40M4

52.41

99.203

0.52
  comM Haemophilus influenzae Rd KW20

51.485

100

0.518
  comM Glaesserella parasuis strain SC1401

50.395

100

0.508
  comM Legionella pneumophila str. Paris

50.497

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.497

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.669

100

0.462