Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LQF09_RS18075 Genome accession   NZ_CP088935
Coordinates   3962198..3963700 (-) Length   500 a.a.
NCBI ID   WP_002928771.1    Uniprot ID   A0A351A2L3
Organism   Thauera sp. WB-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3957198..3968700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF09_RS18050 (LQF09_18060) - 3957742..3958587 (-) 846 WP_232431560.1 ABC transporter ATP-binding protein -
  LQF09_RS18055 (LQF09_18065) - 3958910..3959677 (+) 768 WP_270068618.1 ABC transporter ATP-binding protein -
  LQF09_RS18060 (LQF09_18070) - 3959667..3960392 (+) 726 WP_002928774.1 ABC transporter ATP-binding protein -
  LQF09_RS18065 (LQF09_18075) - 3960471..3960863 (+) 393 WP_002928773.1 rhodanese-like domain-containing protein -
  LQF09_RS18070 (LQF09_18080) - 3960879..3962072 (-) 1194 WP_002928772.1 multidrug effflux MFS transporter -
  LQF09_RS18075 (LQF09_18085) comM 3962198..3963700 (-) 1503 WP_002928771.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LQF09_RS18080 (LQF09_18090) - 3963790..3964047 (-) 258 WP_002928770.1 accessory factor UbiK family protein -
  LQF09_RS18085 (LQF09_18095) - 3964319..3965080 (+) 762 WP_270068619.1 TorF family putative porin -
  LQF09_RS18090 (LQF09_18100) glnK 3965144..3965482 (+) 339 WP_002928762.1 P-II family nitrogen regulator -
  LQF09_RS18095 (LQF09_18105) - 3965496..3966845 (+) 1350 WP_270068620.1 ammonium transporter -
  LQF09_RS18100 (LQF09_18110) glnK 3966944..3967282 (+) 339 WP_002928757.1 P-II family nitrogen regulator -
  LQF09_RS18105 (LQF09_18115) amt 3967400..3968626 (+) 1227 WP_002928755.1 ammonium transporter -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53186.86 Da        Isoelectric Point: 8.4130

>NTDB_id=634086 LQF09_RS18075 WP_002928771.1 3962198..3963700(-) (comM) [Thauera sp. WB-2]
MSLALVRSRALDGLEAHEVMVEVHLANGLPAFNLVGLPDTEVREARDRVRAAIQTSQFEFPQRRITVNLAPADLPKEGGR
FDLAIAVGILAASGQVADGSLDGIEFCGELSLTGGLRGVRGVLAVALAAARARRKLVLPADNAAEAVLAQDAFVLGAASL
LEVCAHLNGHTVLQRAASRPPETALRDGMPDLADVRGQLQARRALEVAAAGAHSILLFGPPGTGKSMLAQRLPGLLPVMT
EAEAVESAALFSLEGSFDPARWRQRPFRAPHHTASAAALVGGGAMPRPGEISLANHGVLFLDELPEFDRRVLEALREPLE
SGTVTVSRARKRAEFPARFQLVAAMNPCPCGYAGHPHRACVCTPEQVARYRARISGPLLDRIDLSVEVPAIAHDELASAS
PGEDSAAVRARVATARSRQFERQGTVNARLEPGQVERWCTPDAAGASLLKQAMSRLNLSARAYHRILRVARTLADLAGLA
QPGSAQVAEAIQYRRSVDGR

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=634086 LQF09_RS18075 WP_002928771.1 3962198..3963700(-) (comM) [Thauera sp. WB-2]
ATGTCCCTTGCGCTGGTGCGCAGTCGAGCGCTCGACGGCCTCGAAGCCCACGAGGTCATGGTCGAGGTGCACCTGGCCAA
CGGCCTGCCGGCATTCAACCTCGTCGGCCTGCCCGATACCGAGGTGCGCGAGGCGCGTGATCGTGTGCGCGCCGCGATCC
AGACCTCGCAGTTCGAATTCCCACAACGCCGGATCACCGTCAATCTCGCGCCTGCCGACCTGCCAAAGGAGGGCGGGCGC
TTCGATCTCGCCATTGCCGTTGGCATCCTGGCCGCGTCCGGTCAGGTGGCTGATGGGAGCCTTGACGGCATCGAGTTCTG
TGGCGAGCTGTCGCTGACCGGCGGCCTGCGCGGGGTGCGTGGTGTGCTGGCGGTGGCGCTGGCCGCAGCACGTGCGCGCC
GTAAGCTGGTGCTGCCGGCCGACAATGCTGCCGAGGCCGTGCTCGCCCAGGATGCCTTCGTGCTGGGGGCTGCCAGCCTG
CTTGAGGTGTGCGCTCACCTCAATGGCCATACCGTGCTGCAGCGTGCGGCATCACGGCCTCCCGAGACAGCGTTACGCGA
CGGCATGCCCGACCTCGCCGACGTGCGTGGTCAGTTGCAGGCGCGTCGCGCGCTTGAGGTGGCAGCAGCAGGTGCGCACT
CGATCCTGCTTTTTGGCCCGCCCGGCACGGGCAAGTCGATGCTCGCTCAGCGTCTGCCGGGGCTGTTGCCGGTGATGACC
GAGGCGGAGGCGGTCGAGAGCGCCGCGCTGTTCTCGCTCGAAGGGAGCTTCGATCCCGCGCGCTGGCGCCAGCGGCCCTT
CAGGGCGCCCCACCACACCGCTTCGGCTGCCGCGCTCGTCGGCGGCGGGGCGATGCCGCGGCCAGGCGAGATCTCGCTGG
CAAACCACGGCGTGCTCTTCCTCGACGAGCTGCCGGAGTTCGATCGCCGTGTGCTCGAGGCTTTGCGCGAGCCGCTCGAG
AGCGGCACGGTGACGGTGTCGCGTGCGCGCAAGCGCGCTGAGTTTCCGGCCCGCTTTCAGCTCGTGGCCGCGATGAATCC
GTGCCCCTGCGGCTATGCCGGCCATCCGCATCGCGCCTGCGTGTGTACGCCTGAGCAGGTGGCGCGCTATCGCGCGCGCA
TCTCCGGCCCGCTGCTCGACCGCATCGATCTCAGCGTTGAAGTGCCTGCGATCGCGCACGATGAGCTTGCCAGCGCCAGT
CCGGGGGAGGATTCGGCCGCGGTGCGCGCACGCGTGGCGACGGCGCGCTCGCGTCAGTTCGAACGCCAGGGCACGGTCAA
TGCCCGCCTCGAACCGGGGCAGGTGGAGCGCTGGTGCACACCGGACGCCGCCGGGGCGAGCCTGCTCAAGCAGGCAATGA
GCCGCCTCAACCTGTCCGCGCGTGCCTATCACCGCATCCTGCGCGTCGCGCGCACGCTCGCCGACCTGGCTGGCCTGGCT
CAGCCCGGATCCGCGCAGGTGGCCGAGGCCATCCAGTACCGGCGCAGCGTCGATGGGCGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A351A2L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.332

99.4

0.55
  comM Haemophilus influenzae Rd KW20

53.877

100

0.542
  comM Vibrio campbellii strain DS40M4

53.629

99.2

0.532
  comM Glaesserella parasuis strain SC1401

51.594

100

0.518
  comM Legionella pneumophila str. Paris

49.4

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.4

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.334

100

0.446