Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | LRK53_RS05690 | Genome accession | NZ_CP088923 |
| Coordinates | 1320855..1322021 (+) | Length | 388 a.a. |
| NCBI ID | WP_027493070.1 | Uniprot ID | - |
| Organism | Rhodanobacter thiooxydans strain FW510-R12 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1315855..1327021
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRK53_RS05665 (LRK53_05665) | - | 1315924..1317096 (-) | 1173 | WP_027491452.1 | IS4 family transposase | - |
| LRK53_RS05670 (LRK53_05670) | - | 1317631..1317777 (+) | 147 | WP_235642555.1 | hypothetical protein | - |
| LRK53_RS05675 (LRK53_05675) | - | 1317893..1318468 (-) | 576 | WP_027493072.1 | YggT family protein | - |
| LRK53_RS05680 (LRK53_05680) | proC | 1318465..1319289 (-) | 825 | WP_235642556.1 | pyrroline-5-carboxylate reductase | - |
| LRK53_RS05685 (LRK53_05685) | pilT | 1319645..1320682 (+) | 1038 | WP_027493071.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| LRK53_RS05690 (LRK53_05690) | pilU | 1320855..1322021 (+) | 1167 | WP_027493070.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| LRK53_RS05695 (LRK53_05695) | - | 1322090..1322467 (-) | 378 | WP_235642557.1 | BON domain-containing protein | - |
| LRK53_RS05700 (LRK53_05700) | - | 1322708..1324492 (-) | 1785 | WP_027493068.1 | hypothetical protein | - |
| LRK53_RS05705 (LRK53_05705) | - | 1324593..1325519 (-) | 927 | WP_027493067.1 | aspartate carbamoyltransferase catalytic subunit | - |
| LRK53_RS05710 (LRK53_05710) | ruvX | 1325552..1326001 (-) | 450 | WP_027493066.1 | Holliday junction resolvase RuvX | - |
| LRK53_RS05715 (LRK53_05715) | - | 1325998..1326567 (-) | 570 | WP_008435790.1 | YqgE/AlgH family protein | - |
Sequence
Protein
Download Length: 388 a.a. Molecular weight: 43421.83 Da Isoelectric Point: 6.7735
>NTDB_id=634012 LRK53_RS05690 WP_027493070.1 1320855..1322021(+) (pilU) [Rhodanobacter thiooxydans strain FW510-R12]
MSDFDFTSFLKLMVHKKASDLFITAGVAPSMKVQGRIVPITQSPLSVQQARDMVLNVMTPGQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNCVGMVLRRIESKIPTIEELTLPPVIKQLAMTKRGIIVFVGATGSGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEYVHKHEGCIITQREVGIDTDSWDNALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRILHFFPEDRRQQLLMDLSLNLKGIVAQQLIPTPDGKARRVAVEILLGTPLVQDYIRQGEIHKLKEVMKESTLLGMKTF
DQSLVELYHAGEISYEDALRYADSSNEVRLRIKLAQGGDAHTLSQGLEGVELEENRDSQNFSSNFLNR
MSDFDFTSFLKLMVHKKASDLFITAGVAPSMKVQGRIVPITQSPLSVQQARDMVLNVMTPGQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNCVGMVLRRIESKIPTIEELTLPPVIKQLAMTKRGIIVFVGATGSGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEYVHKHEGCIITQREVGIDTDSWDNALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRILHFFPEDRRQQLLMDLSLNLKGIVAQQLIPTPDGKARRVAVEILLGTPLVQDYIRQGEIHKLKEVMKESTLLGMKTF
DQSLVELYHAGEISYEDALRYADSSNEVRLRIKLAQGGDAHTLSQGLEGVELEENRDSQNFSSNFLNR
Nucleotide
Download Length: 1167 bp
>NTDB_id=634012 LRK53_RS05690 WP_027493070.1 1320855..1322021(+) (pilU) [Rhodanobacter thiooxydans strain FW510-R12]
ATGAGCGACTTCGATTTCACCTCGTTCCTGAAACTGATGGTGCACAAGAAGGCCTCCGATTTGTTCATCACCGCGGGCGT
CGCTCCTTCGATGAAGGTGCAGGGCCGGATCGTGCCGATCACGCAGAGCCCGCTCAGCGTGCAGCAGGCGCGCGACATGG
TGCTCAACGTGATGACGCCGGGCCAGCGCGAGGAGTTCGAGAAGACCCACGAGTGCCAGTTCGCGATCTCCGCGCAGGGC
GTGGGCCGCTTCCGCGTGTCGTGCTTCTACCAGCGCAACTGCGTGGGCATGGTGCTGCGCCGGATCGAGTCGAAGATCCC
CACCATCGAGGAGCTGACGTTGCCGCCGGTGATCAAGCAACTGGCGATGACCAAGCGCGGCATCATCGTTTTCGTCGGCG
CCACCGGCTCGGGCAAATCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAACTCGACCGGGCACATCATCACC
ATCGAGGACCCGATCGAGTACGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGACAG
CTGGGACAACGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAAGTCCGCACCCGCGAGGGCA
TGGACCACGCGATCGCTTTCGCCGAAACCGGCCACCTGGTGCTGTGCACGCTGCACGCGAACAATGCCAACCAGGCGATG
GACCGCATCCTGCACTTCTTCCCGGAGGATCGCCGCCAGCAGCTGCTGATGGACCTGTCGCTGAACCTGAAAGGCATCGT
GGCGCAGCAGCTGATCCCCACACCCGACGGCAAGGCCCGCCGGGTCGCGGTGGAGATTCTGCTGGGCACGCCGCTGGTGC
AGGACTACATCCGCCAGGGCGAGATCCACAAGCTGAAGGAAGTGATGAAGGAGTCCACCCTGCTCGGCATGAAGACCTTC
GACCAGAGCCTGGTCGAGCTGTACCACGCCGGCGAGATCAGCTACGAGGATGCCCTGCGCTACGCCGACAGTTCCAACGA
GGTGCGCCTGCGCATCAAGCTGGCCCAGGGCGGCGACGCGCATACCCTGTCACAGGGCCTGGAAGGCGTCGAGCTGGAGG
AAAACCGCGACTCGCAGAACTTCAGCAGCAATTTCCTCAACCGCTGA
ATGAGCGACTTCGATTTCACCTCGTTCCTGAAACTGATGGTGCACAAGAAGGCCTCCGATTTGTTCATCACCGCGGGCGT
CGCTCCTTCGATGAAGGTGCAGGGCCGGATCGTGCCGATCACGCAGAGCCCGCTCAGCGTGCAGCAGGCGCGCGACATGG
TGCTCAACGTGATGACGCCGGGCCAGCGCGAGGAGTTCGAGAAGACCCACGAGTGCCAGTTCGCGATCTCCGCGCAGGGC
GTGGGCCGCTTCCGCGTGTCGTGCTTCTACCAGCGCAACTGCGTGGGCATGGTGCTGCGCCGGATCGAGTCGAAGATCCC
CACCATCGAGGAGCTGACGTTGCCGCCGGTGATCAAGCAACTGGCGATGACCAAGCGCGGCATCATCGTTTTCGTCGGCG
CCACCGGCTCGGGCAAATCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAACTCGACCGGGCACATCATCACC
ATCGAGGACCCGATCGAGTACGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGACAG
CTGGGACAACGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAAGTCCGCACCCGCGAGGGCA
TGGACCACGCGATCGCTTTCGCCGAAACCGGCCACCTGGTGCTGTGCACGCTGCACGCGAACAATGCCAACCAGGCGATG
GACCGCATCCTGCACTTCTTCCCGGAGGATCGCCGCCAGCAGCTGCTGATGGACCTGTCGCTGAACCTGAAAGGCATCGT
GGCGCAGCAGCTGATCCCCACACCCGACGGCAAGGCCCGCCGGGTCGCGGTGGAGATTCTGCTGGGCACGCCGCTGGTGC
AGGACTACATCCGCCAGGGCGAGATCCACAAGCTGAAGGAAGTGATGAAGGAGTCCACCCTGCTCGGCATGAAGACCTTC
GACCAGAGCCTGGTCGAGCTGTACCACGCCGGCGAGATCAGCTACGAGGATGCCCTGCGCTACGCCGACAGTTCCAACGA
GGTGCGCCTGCGCATCAAGCTGGCCCAGGGCGGCGACGCGCATACCCTGTCACAGGGCCTGGAAGGCGTCGAGCTGGAGG
AAAACCGCGACTCGCAGAACTTCAGCAGCAATTTCCTCAACCGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
66.845 |
96.392 |
0.644 |
| pilU | Acinetobacter baylyi ADP1 |
62.921 |
91.753 |
0.577 |
| pilU | Vibrio cholerae strain A1552 |
52.809 |
91.753 |
0.485 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
40.86 |
95.876 |
0.392 |