Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LRK53_RS03370 Genome accession   NZ_CP088923
Coordinates   797623..799116 (+) Length   497 a.a.
NCBI ID   WP_027491347.1    Uniprot ID   -
Organism   Rhodanobacter thiooxydans strain FW510-R12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 792623..804116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRK53_RS03355 (LRK53_03355) - 795031..796239 (-) 1209 WP_081666524.1 ribonucleotide-diphosphate reductase subunit beta -
  LRK53_RS03360 (LRK53_03360) glnK 796695..797033 (-) 339 WP_008437572.1 P-II family nitrogen regulator -
  LRK53_RS03365 (LRK53_03365) - 797214..797474 (+) 261 WP_027491348.1 accessory factor UbiK family protein -
  LRK53_RS03370 (LRK53_03370) comM 797623..799116 (+) 1494 WP_027491347.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LRK53_RS03375 (LRK53_03375) aceA 799396..800694 (-) 1299 WP_027491346.1 isocitrate lyase -
  LRK53_RS03380 (LRK53_03380) aceB 800907..802499 (-) 1593 WP_235642499.1 malate synthase A -
  LRK53_RS03385 (LRK53_03385) - 802623..803657 (+) 1035 WP_027491344.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53629.51 Da        Isoelectric Point: 7.8799

>NTDB_id=634005 LRK53_RS03370 WP_027491347.1 797623..799116(+) (comM) [Rhodanobacter thiooxydans strain FW510-R12]
MSLAVTLSRAQEGIAAPQVMVEVHLSGGLPSTSIVGLPEAAVREARDRVRVAIQNTAFEYPGRRVTVNLAPAELPKDGGR
FDLPIALGILAASGQVPREKLDDCEFLGELALTGSLRGVSGVLPALLRARTRGRRVVVPRANASEAALVSDMDVRVADTL
AEVCGWLRGAHELSMPVGIPSDGGANGGPDLADVRGQLQARRALEITAVGGHHLLLMGPPGTGKTMLAERLPGILPPLSE
SEALETCAVLSVAGQVTDPEHWRRRPFRAPHHTASAVALVGGGPYPRPGEISLAHNGVLFLDELPEFSRHVLEVLREPME
SGHIVISRAARQSTFPAQFQLVAAMNPCPCGYAGDPRCQCTPDQIQRYRARISGPLLDRIDLCVEVPPVPLAELGTPRNQ
RDEDSATVRARVLKARRQSLMRAGRPNAEISTRELERDCALGPAERRWFESALERLGLSARAYHRVLRVARTIADLDGGA
ALLEREHLAEALQYRRF

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=634005 LRK53_RS03370 WP_027491347.1 797623..799116(+) (comM) [Rhodanobacter thiooxydans strain FW510-R12]
ATGAGTCTTGCCGTCACCCTCAGTCGCGCCCAGGAAGGGATCGCCGCACCGCAGGTGATGGTTGAGGTACACCTTTCCGG
CGGCCTGCCAAGCACCAGCATCGTCGGCCTGCCCGAGGCCGCAGTGCGCGAGGCGCGCGACCGCGTGCGGGTGGCGATCC
AGAACACCGCCTTCGAATATCCCGGCCGTCGCGTCACGGTGAACCTCGCGCCGGCCGAGCTGCCGAAGGATGGCGGCCGT
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCAGCGGACAGGTGCCGCGCGAGAAGCTGGACGATTGCGAGTTCCT
CGGCGAGCTGGCCCTGACCGGCTCCCTGCGTGGCGTGTCCGGCGTGCTGCCGGCGCTGCTGCGCGCGCGCACGCGCGGCC
GCCGCGTGGTGGTGCCGCGCGCAAACGCCAGCGAGGCGGCGCTGGTGTCCGACATGGACGTGCGCGTGGCCGACACGCTG
GCCGAGGTGTGCGGCTGGCTGCGCGGCGCGCACGAGCTGTCGATGCCGGTGGGCATTCCCAGCGACGGCGGCGCCAACGG
CGGCCCGGACCTGGCCGACGTGCGCGGCCAGCTGCAGGCGCGCCGCGCGCTGGAGATCACCGCAGTGGGCGGCCATCATC
TGCTGCTGATGGGGCCGCCCGGCACCGGCAAGACCATGCTGGCCGAGCGCCTGCCCGGCATCCTGCCGCCGCTGTCCGAA
TCGGAGGCGCTGGAAACCTGCGCCGTGCTGTCGGTGGCCGGCCAGGTCACCGATCCGGAGCACTGGCGGCGGCGGCCCTT
CCGCGCGCCGCACCACACCGCGTCGGCGGTGGCGCTGGTTGGTGGCGGTCCGTATCCGCGCCCGGGCGAGATCTCGCTGG
CGCACAACGGCGTGCTGTTCCTGGACGAGTTGCCGGAGTTCAGCCGGCACGTGCTGGAAGTGTTGCGCGAGCCGATGGAG
TCGGGCCACATCGTGATCTCGCGGGCGGCGCGGCAGTCGACGTTTCCCGCCCAGTTCCAACTGGTGGCGGCGATGAATCC
GTGCCCCTGCGGCTACGCCGGCGACCCGCGCTGCCAGTGCACGCCGGACCAGATCCAGCGCTACCGCGCGCGCATTTCCG
GGCCATTGCTCGACCGCATCGACCTGTGCGTGGAAGTGCCGCCGGTACCGCTGGCCGAACTGGGCACGCCGCGCAACCAA
CGCGACGAGGATTCCGCCACGGTGCGTGCGCGCGTGCTCAAGGCGCGCCGGCAGTCGCTGATGCGCGCGGGCCGGCCGAA
CGCCGAGATCAGCACGCGCGAGCTGGAGCGCGACTGCGCGCTGGGGCCGGCCGAGCGGCGCTGGTTCGAGTCGGCGCTGG
AACGACTGGGCCTGTCCGCCCGTGCCTACCATCGCGTGCTGCGGGTGGCCCGCACCATCGCCGACCTCGATGGCGGCGCC
GCCTTGCTGGAGCGCGAGCACCTGGCCGAGGCGCTGCAGTACCGGCGGTTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.96

99.598

0.557
  comM Haemophilus influenzae Rd KW20

54.108

100

0.543
  comM Vibrio campbellii strain DS40M4

54.343

99.598

0.541
  comM Glaesserella parasuis strain SC1401

53.414

100

0.535
  comM Legionella pneumophila str. Paris

52.305

100

0.525
  comM Legionella pneumophila strain ERS1305867

52.305

100

0.525
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.382

100

0.455