Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LRK24_RS03180 Genome accession   NZ_CP088919
Coordinates   723668..725161 (+) Length   497 a.a.
NCBI ID   WP_007513654.1    Uniprot ID   I4WJW5
Organism   Rhodanobacter denitrificans strain DSM-24678     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 718668..730161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRK24_RS03160 (LRK24_03160) - 719467..719763 (+) 297 WP_007513647.1 GIY-YIG nuclease family protein -
  LRK24_RS03165 (LRK24_03165) - 719862..722282 (-) 2421 WP_007513648.1 ribonucleoside-diphosphate reductase subunit alpha -
  LRK24_RS03170 (LRK24_03170) glnK 722739..723077 (-) 339 WP_007513650.1 P-II family nitrogen regulator -
  LRK24_RS03175 (LRK24_03175) - 723258..723518 (+) 261 WP_015448938.1 accessory factor UbiK family protein -
  LRK24_RS03180 (LRK24_03180) comM 723668..725161 (+) 1494 WP_007513654.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LRK24_RS03185 (LRK24_03185) - 725233..727029 (+) 1797 WP_007513656.1 sodium:proton antiporter -
  LRK24_RS03190 (LRK24_03190) aceA 727132..728427 (-) 1296 WP_007513658.1 isocitrate lyase -
  LRK24_RS03195 (LRK24_03195) aceB 728475..730103 (-) 1629 WP_007513661.1 malate synthase A -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53567.47 Da        Isoelectric Point: 7.8425

>NTDB_id=633921 LRK24_RS03180 WP_007513654.1 723668..725161(+) (comM) [Rhodanobacter denitrificans strain DSM-24678]
MSLAVTLSRAQEGIAAPQVMVEVHLSGGLPCTNIVGLPEAAVREARDRVRVAIQNTAFEYPGRRVTVNLAPAELPKDGGR
FDLPIALGILAASGQVPREKLDDCEFLGELALTGSLRGVSGVLPALLRARTRGRRVVVPRANAAEAALVSDVDVRVADTL
AEVCGWLRGAHELSMPVGIPSDGGADDGPDLADVRGQLQARRALEITAVGGHHLLLVGPPGTGKTMLAERLPGILPPLSE
SEALETCAVLSVAGQVTDPKHWRRRPFRAPHHTASAVALVGGGSYPRPGEISLAHNGVLFLDELPEFSRHVLEVLREPME
SGHIVISRAARQSAFPAQFQLVAAMNPCPCGYAGDPRCQCTPDQVQRYRARISGPLLDRIDLCVEVPPVPLAELGTPRNA
RDEDSATVRVRVLKARRQSLMRAGRPNAEISTRELERDCALGPAERRWFESALERLGLSARAYHRVLRVARTIADLDGGA
ALLEREHLAEALQYRRF

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=633921 LRK24_RS03180 WP_007513654.1 723668..725161(+) (comM) [Rhodanobacter denitrificans strain DSM-24678]
ATGAGTCTTGCCGTCACCCTCAGCCGCGCCCAGGAAGGGATCGCCGCACCGCAGGTGATGGTCGAGGTACACCTTTCCGG
CGGCTTGCCGTGCACCAATATCGTCGGCCTGCCCGAGGCCGCGGTGCGCGAGGCGCGCGATCGCGTGCGGGTGGCGATCC
AGAATACCGCCTTCGAGTATCCCGGCCGCCGCGTCACCGTGAATCTGGCGCCGGCCGAGTTGCCCAAGGACGGTGGCCGT
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCAGCGGCCAGGTGCCGCGCGAGAAACTGGACGACTGCGAATTTCT
CGGCGAGCTGGCGCTGACCGGCTCCCTGCGCGGCGTCTCCGGCGTGCTGCCGGCGCTGCTGCGCGCACGCACGCGTGGTC
GTCGGGTGGTGGTGCCGCGCGCGAACGCCGCCGAGGCGGCGCTGGTCTCCGATGTGGATGTGCGCGTGGCCGACACGCTG
GCCGAAGTGTGCGGCTGGCTGCGCGGCGCGCACGAACTGTCGATGCCGGTCGGCATCCCCAGTGACGGCGGTGCCGACGA
CGGTCCGGATCTGGCCGACGTGCGCGGCCAGTTGCAGGCGCGGCGCGCGCTGGAGATTACCGCGGTGGGCGGCCATCACC
TGCTGCTGGTCGGGCCGCCGGGTACCGGCAAGACCATGCTGGCCGAACGCCTGCCGGGCATCCTGCCGCCGCTGTCGGAA
TCGGAGGCGCTGGAAACCTGCGCGGTGCTGTCGGTGGCTGGGCAGGTCACTGATCCGAAGCATTGGCGGCGGCGGCCGTT
TCGCGCGCCGCACCACACCGCGTCGGCGGTGGCGCTGGTCGGTGGCGGTTCGTATCCGCGCCCGGGCGAGATTTCGCTGG
CGCACAACGGCGTGCTGTTCCTGGACGAGTTGCCGGAGTTCAGCCGGCACGTGCTGGAGGTGCTGCGCGAGCCGATGGAA
TCGGGCCACATCGTGATCTCGCGGGCGGCGCGGCAGTCGGCGTTCCCGGCCCAGTTCCAGCTGGTCGCGGCGATGAATCC
GTGCCCCTGCGGCTATGCCGGCGACCCGCGCTGCCAGTGCACGCCGGATCAGGTCCAGCGCTACCGCGCACGCATTTCTG
GGCCGCTGCTCGACCGCATCGACCTGTGCGTGGAAGTGCCGCCGGTGCCGCTGGCCGAGCTGGGTACGCCGCGCAACGCA
CGCGACGAGGATTCCGCTACGGTGCGCGTGCGCGTGCTCAAGGCGCGCCGGCAGTCGCTGATGCGCGCGGGCCGGCCGAA
TGCCGAGATCAGCACGCGCGAACTGGAGCGCGACTGCGCGCTGGGGCCGGCCGAGCGCCGCTGGTTCGAATCGGCGCTGG
AGCGGCTGGGCCTGTCCGCGCGCGCCTACCACCGCGTGCTGCGGGTGGCGCGCACGATCGCCGACCTCGACGGCGGCGCC
GCCTTGCTGGAGCGCGAGCACCTGGCCGAAGCGCTGCAATACCGGAGGTTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I4WJW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.758

99.598

0.555
  comM Vibrio campbellii strain DS40M4

54.343

99.598

0.541
  comM Glaesserella parasuis strain SC1401

53.707

100

0.539
  comM Haemophilus influenzae Rd KW20

53.707

100

0.539
  comM Legionella pneumophila str. Paris

51.904

100

0.521
  comM Legionella pneumophila strain ERS1305867

51.904

100

0.521
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.382

100

0.455