Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LQ771_RS14055 Genome accession   NZ_CP088252
Coordinates   3061213..3062715 (-) Length   500 a.a.
NCBI ID   WP_231350015.1    Uniprot ID   -
Organism   Frateuria soli strain 5GH9-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3056213..3067715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ771_RS14045 (LQ771_14045) aceA 3057711..3059006 (+) 1296 WP_231350013.1 isocitrate lyase -
  LQ771_RS14050 (LQ771_14050) - 3059082..3060890 (-) 1809 WP_231350014.1 sodium:proton antiporter -
  LQ771_RS14055 (LQ771_14055) comM 3061213..3062715 (-) 1503 WP_231350015.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LQ771_RS14060 (LQ771_14060) - 3062980..3063237 (-) 258 WP_231350016.1 accessory factor UbiK family protein -
  LQ771_RS14065 (LQ771_14065) glnK 3063412..3063750 (+) 339 WP_231322133.1 P-II family nitrogen regulator -
  LQ771_RS14070 (LQ771_14070) gpmA 3063972..3064715 (-) 744 WP_231350017.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  LQ771_RS14075 (LQ771_14075) - 3064854..3065498 (+) 645 WP_231350018.1 hypothetical protein -
  LQ771_RS14080 (LQ771_14080) hemF 3065561..3066463 (-) 903 WP_231350019.1 oxygen-dependent coproporphyrinogen oxidase -
  LQ771_RS14085 (LQ771_14085) - 3066552..3066965 (-) 414 WP_231350020.1 hypothetical protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53575.30 Da        Isoelectric Point: 7.4300

>NTDB_id=633552 LQ771_RS14055 WP_231350015.1 3061213..3062715(-) (comM) [Frateuria soli strain 5GH9-11]
MSLAVTLSRAQEGVAAPQVMVEVHLSGGLPGTHIVGLPEAAVREARDRVRVAIQSAAFEYPNRKVTVNLAPAELPKDGGR
FDLAIALGILAAGGQVPREKLDECEFLGELALSGDLRGVSGVLPALLRARARGRRVVVPRANAAEAALVPEADVLVADTL
ADVCSWLRDAGELALPGQADNGQTIAPGAPDLVDVRGQLQARRALEIAAAGGHHLLLIGPPGTGKTMLAERLPGILPPLG
ETEALETCAVLSVAGQRVDPARWRQRPFRAPHHTASAVALVGGGSHPRPGEISLAHNGVLFLDEFPEFSRHVLEVLREPL
ESGQILVSRAARQSTFPAQFQLVAAMNPCPCGYAGDARERCRCTPDQIQRYRGRISGPLLDRIDLCVEVPRVPLAELGAP
RSAYDEDSATVRARVVQARDRALARAGRANAEINTRELERDCALGEAERRWFEAALERLGLSARAYHRILRVARSIADLD
GGAALLDRAHLAEALQYRRF

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=633552 LQ771_RS14055 WP_231350015.1 3061213..3062715(-) (comM) [Frateuria soli strain 5GH9-11]
GTGAGCCTGGCCGTCACCTTGAGCCGCGCCCAGGAAGGCGTCGCCGCGCCGCAGGTGATGGTCGAGGTGCATCTTTCCGG
CGGTTTGCCGGGCACGCACATCGTTGGCCTGCCGGAAGCGGCGGTGCGCGAGGCGCGCGACCGCGTGCGCGTGGCGATCC
AGAGCGCCGCGTTCGAGTATCCCAACCGCAAGGTCACCGTGAACCTGGCGCCGGCCGAGTTGCCCAAGGATGGTGGCCGC
TTCGACCTGGCCATCGCGCTGGGCATCCTGGCGGCGGGGGGGCAGGTGCCGCGCGAGAAACTGGACGAATGCGAGTTCCT
CGGCGAACTGGCGTTGTCGGGCGACCTGCGCGGCGTTTCCGGCGTGTTGCCCGCGCTGCTACGCGCGCGGGCGCGCGGGC
GACGCGTGGTGGTGCCGCGAGCGAATGCCGCGGAGGCGGCGCTGGTGCCGGAAGCCGACGTGCTGGTGGCCGATACCCTG
GCCGACGTCTGCAGCTGGCTGCGCGACGCGGGGGAACTGGCGCTGCCGGGCCAGGCGGACAACGGCCAGACTATTGCCCC
GGGCGCGCCCGACCTGGTCGACGTGCGTGGCCAGTTGCAGGCCCGGCGCGCGCTGGAAATCGCGGCCGCGGGCGGCCATC
ACCTGCTGCTGATCGGCCCGCCCGGCACCGGCAAGACCATGCTCGCCGAGCGCCTGCCCGGCATCCTGCCGCCGCTGGGG
GAAACCGAAGCGCTGGAAACCTGCGCCGTGCTGTCGGTCGCCGGGCAACGCGTGGACCCGGCGCGCTGGCGCCAGCGCCC
CTTCCGCGCGCCGCACCACACTGCCTCCGCGGTGGCGCTGGTCGGCGGCGGATCGCATCCGCGGCCTGGGGAGATCTCGC
TGGCGCACAACGGCGTGCTGTTTCTCGATGAGTTCCCCGAGTTCAGCCGGCACGTGCTCGAAGTGCTGCGTGAGCCACTG
GAGTCCGGTCAGATCCTGGTCTCGCGCGCCGCGCGACAGTCGACCTTTCCCGCCCAGTTCCAGTTGGTCGCGGCGATGAA
TCCATGCCCTTGCGGCTATGCCGGCGACGCGCGCGAGCGTTGCCGCTGCACGCCCGACCAGATCCAGCGCTACCGCGGCC
GAATTTCCGGCCCGCTGCTGGATCGCATCGACCTCTGCGTGGAAGTGCCGCGCGTGCCGCTGGCCGAACTGGGCGCGCCG
CGCAGCGCGTACGACGAGGATTCGGCCACCGTGCGCGCACGCGTGGTGCAGGCGCGGGACCGTGCGCTGGCCCGCGCGGG
CCGGGCGAACGCCGAGATCAACACGCGCGAACTGGAGCGCGACTGCGCGCTGGGCGAGGCCGAGCGACGCTGGTTCGAGG
CGGCGCTGGAGCGGCTGGGACTGTCGGCGCGGGCCTACCACCGCATTCTGCGCGTGGCGCGGTCGATCGCCGATCTTGAC
GGCGGCGCGGCCTTGCTGGACCGGGCGCATTTGGCCGAAGCCCTGCAGTACCGCCGTTTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.2

100

0.552
  comM Vibrio campbellii strain DS40M4

54.8

100

0.548
  comM Haemophilus influenzae Rd KW20

53.373

100

0.538
  comM Glaesserella parasuis strain SC1401

53.28

100

0.536
  comM Legionella pneumophila str. Paris

50.895

100

0.512
  comM Legionella pneumophila strain ERS1305867

50.895

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.89

99.8

0.448