Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | LQ771_RS03550 | Genome accession | NZ_CP088252 |
| Coordinates | 776864..778030 (+) | Length | 388 a.a. |
| NCBI ID | WP_231351009.1 | Uniprot ID | - |
| Organism | Frateuria soli strain 5GH9-11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 771864..783030
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ771_RS03520 (LQ771_03520) | pdxH | 771973..772560 (+) | 588 | WP_231351003.1 | pyridoxamine 5'-phosphate oxidase | - |
| LQ771_RS03525 (LQ771_03525) | - | 772557..772997 (+) | 441 | WP_231351004.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| LQ771_RS03530 (LQ771_03530) | - | 772997..773794 (+) | 798 | WP_231351005.1 | ABC transporter substrate-binding protein | - |
| LQ771_RS03535 (LQ771_03535) | - | 773924..774499 (-) | 576 | WP_231351006.1 | YggT family protein | - |
| LQ771_RS03540 (LQ771_03540) | proC | 774496..775329 (-) | 834 | WP_231351007.1 | pyrroline-5-carboxylate reductase | - |
| LQ771_RS03545 (LQ771_03545) | pilT | 775692..776729 (+) | 1038 | WP_231351008.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| LQ771_RS03550 (LQ771_03550) | pilU | 776864..778030 (+) | 1167 | WP_231351009.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| LQ771_RS03555 (LQ771_03555) | - | 778230..778613 (-) | 384 | WP_231351010.1 | BON domain-containing protein | - |
| LQ771_RS03560 (LQ771_03560) | - | 778886..780661 (-) | 1776 | WP_231351011.1 | hypothetical protein | - |
| LQ771_RS03565 (LQ771_03565) | - | 780757..781683 (-) | 927 | WP_231351841.1 | aspartate carbamoyltransferase catalytic subunit | - |
| LQ771_RS03570 (LQ771_03570) | ruvX | 781738..782166 (-) | 429 | WP_231351012.1 | Holliday junction resolvase RuvX | - |
| LQ771_RS03575 (LQ771_03575) | - | 782201..782773 (-) | 573 | WP_231351013.1 | YqgE/AlgH family protein | - |
Sequence
Protein
Download Length: 388 a.a. Molecular weight: 43554.94 Da Isoelectric Point: 6.9195
>NTDB_id=633538 LQ771_RS03550 WP_231351009.1 776864..778030(+) (pilU) [Frateuria soli strain 5GH9-11]
MSDFDFTSFLKLMVHKKASDLFVTAGVAPSMKLQGRIVPITQSPLSVQQARDMVLNIMTPAQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNCVGMVLRRIESKIPTFEELTLPPVLKTLSMTKRGIIIFVGATGSGKSTSLAAMVGYRNQNSTGHIIT
IEDPIEYVHKHEGCIITQREIGIDTDNWDNALKNTLRQAPDVILIGEVRTRETMEYAINFSETGHLCLCTLHANNANQAI
DRILHFFPEDRRQQLFMDLSLNLKGIVAQQLIPTPDGKARRVAVEVLLGTPLVQDYIRQGEIHKIKEVMKDSVNLGMRTF
DQSLVELYHAGEISYEDALRHADSSNEVRLRIKLAQGGDAHTLSQGLEGVELEETRDNNQFGGGMLRR
MSDFDFTSFLKLMVHKKASDLFVTAGVAPSMKLQGRIVPITQSPLSVQQARDMVLNIMTPAQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNCVGMVLRRIESKIPTFEELTLPPVLKTLSMTKRGIIIFVGATGSGKSTSLAAMVGYRNQNSTGHIIT
IEDPIEYVHKHEGCIITQREIGIDTDNWDNALKNTLRQAPDVILIGEVRTRETMEYAINFSETGHLCLCTLHANNANQAI
DRILHFFPEDRRQQLFMDLSLNLKGIVAQQLIPTPDGKARRVAVEVLLGTPLVQDYIRQGEIHKIKEVMKDSVNLGMRTF
DQSLVELYHAGEISYEDALRHADSSNEVRLRIKLAQGGDAHTLSQGLEGVELEETRDNNQFGGGMLRR
Nucleotide
Download Length: 1167 bp
>NTDB_id=633538 LQ771_RS03550 WP_231351009.1 776864..778030(+) (pilU) [Frateuria soli strain 5GH9-11]
ATGAGCGACTTCGATTTCACTTCCTTCCTCAAGCTGATGGTGCACAAGAAGGCGTCGGACCTGTTCGTCACCGCCGGTGT
GGCGCCATCGATGAAACTGCAGGGTCGCATCGTGCCGATCACGCAGAGCCCGCTCAGCGTGCAGCAGGCGCGCGACATGG
TGCTCAACATCATGACGCCGGCGCAGCGCGAGGAGTTCGAGAAGACCCACGAGTGCCAGTTCGCGATCTCCGCGCAGGGC
GTGGGCCGCTTCCGCGTGTCGTGCTTCTACCAGCGCAACTGCGTGGGCATGGTGCTGCGCCGGATCGAGTCGAAGATCCC
GACCTTCGAGGAGCTGACGCTGCCGCCGGTGCTCAAGACGCTGTCGATGACCAAGCGCGGCATCATCATCTTCGTCGGTG
CCACCGGCTCGGGTAAGTCGACATCGCTCGCCGCGATGGTGGGCTACCGCAACCAGAATTCGACCGGCCACATCATCACG
ATCGAGGACCCGATCGAATACGTGCACAAGCACGAAGGCTGCATCATCACGCAGCGCGAAATCGGTATTGATACCGACAA
CTGGGACAACGCGCTGAAGAACACGCTGCGCCAGGCGCCCGACGTGATCCTGATCGGCGAGGTGCGTACCCGCGAGACGA
TGGAGTACGCGATCAACTTCTCCGAGACCGGCCACCTGTGCCTGTGCACGCTGCACGCAAACAACGCCAACCAGGCGATC
GACCGCATCCTGCACTTCTTCCCGGAGGACCGGCGCCAGCAGCTGTTCATGGACCTGTCGCTGAACCTCAAGGGCATCGT
GGCCCAGCAGCTGATCCCCACGCCCGACGGCAAGGCGCGCCGCGTGGCGGTCGAGGTGCTGCTGGGCACGCCGCTGGTGC
AGGACTACATCCGCCAGGGCGAGATCCACAAGATCAAGGAAGTGATGAAGGACTCGGTAAACCTGGGCATGCGCACCTTC
GACCAGAGCCTCGTCGAGCTCTATCACGCCGGCGAGATCAGCTACGAGGACGCGCTGCGCCATGCCGACAGCTCCAACGA
AGTGCGCCTGCGCATCAAGCTGGCGCAGGGCGGCGATGCGCACACCCTGTCGCAGGGCCTGGAGGGCGTCGAACTGGAGG
AGACGCGCGACAACAACCAGTTCGGTGGCGGCATGCTTCGGCGCTGA
ATGAGCGACTTCGATTTCACTTCCTTCCTCAAGCTGATGGTGCACAAGAAGGCGTCGGACCTGTTCGTCACCGCCGGTGT
GGCGCCATCGATGAAACTGCAGGGTCGCATCGTGCCGATCACGCAGAGCCCGCTCAGCGTGCAGCAGGCGCGCGACATGG
TGCTCAACATCATGACGCCGGCGCAGCGCGAGGAGTTCGAGAAGACCCACGAGTGCCAGTTCGCGATCTCCGCGCAGGGC
GTGGGCCGCTTCCGCGTGTCGTGCTTCTACCAGCGCAACTGCGTGGGCATGGTGCTGCGCCGGATCGAGTCGAAGATCCC
GACCTTCGAGGAGCTGACGCTGCCGCCGGTGCTCAAGACGCTGTCGATGACCAAGCGCGGCATCATCATCTTCGTCGGTG
CCACCGGCTCGGGTAAGTCGACATCGCTCGCCGCGATGGTGGGCTACCGCAACCAGAATTCGACCGGCCACATCATCACG
ATCGAGGACCCGATCGAATACGTGCACAAGCACGAAGGCTGCATCATCACGCAGCGCGAAATCGGTATTGATACCGACAA
CTGGGACAACGCGCTGAAGAACACGCTGCGCCAGGCGCCCGACGTGATCCTGATCGGCGAGGTGCGTACCCGCGAGACGA
TGGAGTACGCGATCAACTTCTCCGAGACCGGCCACCTGTGCCTGTGCACGCTGCACGCAAACAACGCCAACCAGGCGATC
GACCGCATCCTGCACTTCTTCCCGGAGGACCGGCGCCAGCAGCTGTTCATGGACCTGTCGCTGAACCTCAAGGGCATCGT
GGCCCAGCAGCTGATCCCCACGCCCGACGGCAAGGCGCGCCGCGTGGCGGTCGAGGTGCTGCTGGGCACGCCGCTGGTGC
AGGACTACATCCGCCAGGGCGAGATCCACAAGATCAAGGAAGTGATGAAGGACTCGGTAAACCTGGGCATGCGCACCTTC
GACCAGAGCCTCGTCGAGCTCTATCACGCCGGCGAGATCAGCTACGAGGACGCGCTGCGCCATGCCGACAGCTCCAACGA
AGTGCGCCTGCGCATCAAGCTGGCGCAGGGCGGCGATGCGCACACCCTGTCGCAGGGCCTGGAGGGCGTCGAACTGGAGG
AGACGCGCGACAACAACCAGTTCGGTGGCGGCATGCTTCGGCGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
64.533 |
96.649 |
0.624 |
| pilU | Acinetobacter baylyi ADP1 |
62.745 |
92.01 |
0.577 |
| pilU | Vibrio cholerae strain A1552 |
53.09 |
91.753 |
0.487 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
40.054 |
95.876 |
0.384 |