Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LQ772_RS15690 Genome accession   NZ_CP088251
Coordinates   3378332..3379834 (-) Length   500 a.a.
NCBI ID   WP_231322129.1    Uniprot ID   -
Organism   Frateuria edaphi strain 5GH9-34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3373332..3384834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ772_RS15680 (LQ772_15680) aceA 3374779..3376074 (+) 1296 WP_231322124.1 isocitrate lyase -
  LQ772_RS15685 (LQ772_15685) - 3376200..3377993 (-) 1794 WP_231322126.1 sodium:proton antiporter -
  LQ772_RS15690 (LQ772_15690) comM 3378332..3379834 (-) 1503 WP_231322129.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LQ772_RS15695 (LQ772_15695) - 3380092..3380346 (-) 255 WP_231322131.1 accessory factor UbiK family protein -
  LQ772_RS15700 (LQ772_15700) glnK 3380520..3380858 (+) 339 WP_231322133.1 P-II family nitrogen regulator -
  LQ772_RS15705 (LQ772_15705) - 3380930..3381451 (-) 522 WP_231322134.1 DUF1453 domain-containing protein -
  LQ772_RS15710 (LQ772_15710) gpmA 3381553..3382296 (-) 744 WP_231322136.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  LQ772_RS15715 (LQ772_15715) - 3382437..3383081 (+) 645 WP_231322138.1 hypothetical protein -
  LQ772_RS15720 (LQ772_15720) hemF 3383148..3384065 (-) 918 WP_231322140.1 oxygen-dependent coproporphyrinogen oxidase -
  LQ772_RS15725 (LQ772_15725) - 3384152..3384565 (-) 414 WP_231322141.1 hypothetical protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53730.54 Da        Isoelectric Point: 7.6681

>NTDB_id=633529 LQ772_RS15690 WP_231322129.1 3378332..3379834(-) (comM) [Frateuria edaphi strain 5GH9-34]
MSLAVTLTRAQEGVSAPQVMVEVHLSGGLPGTHIVGLPEAAVREARDRVRVAIQNAAFEYPNRKVTVNLAPAELPKDGGR
FDLAIALGILAAGGQVPREKLDECEFLGELALSGDLRGVSGVLPALLRARARGRRVVVPRANAAEAALVPEANVLVADTL
ADVCGWLRDAQELALPGPADHGQTTDPDVPDLVDVRGQLQARRALEIAAAGGHHLLLIGPPGTGKTMLAARLPGILPPLS
ESEALETCAVLSVAGQRVDPARWRQRPFRAPHHTASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFTRHVLEVLREPL
ESGQILVSRAARQATFPAQFQLVAAMNPCPCGYAGDARERCRCTPDQIQRYRGRISGPLLDRIDLCVEVPRVPLAELGAP
RSVYDEDSATVRARVVQARERALARAGRANSEINTRELERDCALGAPERRWFEAALERLGLSARAYHRILRVARSIADLD
GGAALLDRAHLAEALQYRRF

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=633529 LQ772_RS15690 WP_231322129.1 3378332..3379834(-) (comM) [Frateuria edaphi strain 5GH9-34]
GTGAGCCTGGCGGTCACCCTCACGCGTGCCCAGGAAGGCGTTTCCGCACCGCAAGTGATGGTCGAGGTGCATCTGTCCGG
CGGCCTGCCGGGCACGCATATCGTCGGCCTGCCGGAAGCTGCGGTGCGCGAGGCGCGTGACCGCGTGCGAGTGGCGATCC
AGAACGCGGCGTTCGAATACCCCAACCGCAAGGTCACCGTGAACCTGGCGCCGGCCGAGCTGCCCAAGGACGGCGGCCGC
TTCGACCTGGCCATCGCGCTGGGCATCCTGGCCGCGGGTGGTCAGGTGCCACGCGAAAAGCTGGACGAGTGCGAGTTCCT
GGGAGAACTGGCGCTGTCGGGTGATCTGCGTGGCGTCTCGGGCGTGTTGCCGGCGCTGCTGCGCGCGCGGGCGCGCGGCC
GGCGCGTAGTGGTGCCGCGCGCCAATGCCGCCGAGGCCGCGCTGGTGCCGGAGGCCAATGTACTGGTGGCCGATACGCTG
GCGGACGTCTGTGGCTGGTTGCGCGACGCGCAGGAACTCGCCCTGCCGGGCCCGGCCGACCATGGGCAGACAACCGATCC
GGACGTTCCCGACCTGGTCGACGTGCGCGGCCAGTTGCAGGCGCGCCGCGCGCTGGAAATTGCCGCTGCGGGCGGCCACC
ACCTTTTGCTGATTGGTCCGCCAGGCACCGGCAAGACCATGCTGGCCGCGCGCCTGCCCGGCATCCTGCCGCCGCTGAGC
GAGAGCGAAGCGCTGGAAACCTGCGCCGTGCTGTCGGTCGCCGGGCAGCGTGTGGATCCGGCGCGCTGGCGCCAGCGGCC
ATTCCGCGCGCCGCATCACACCGCCTCGGCGGTGGCGCTGGTCGGTGGCGGTTCGCATCCGCGGCCGGGCGAGATATCGC
TGGCGCACAACGGGGTGCTTTTTCTCGACGAACTGCCCGAGTTCACCCGGCACGTACTCGAAGTGCTGCGCGAGCCGCTG
GAGTCCGGCCAGATCCTGGTGTCGCGCGCCGCGCGGCAGGCGACCTTCCCGGCCCAGTTCCAGTTGGTCGCGGCGATGAA
TCCGTGCCCCTGCGGCTATGCCGGCGACGCCCGCGAACGTTGCCGTTGCACGCCCGACCAGATCCAGCGCTACCGAGGGC
GTATCTCCGGGCCGTTGCTGGACCGCATCGACCTGTGTGTCGAAGTACCGCGCGTGCCGCTCGCCGAGCTGGGGGCTCCG
CGCAGTGTGTACGACGAAGACTCGGCCACCGTGCGCGCGCGCGTGGTCCAGGCCCGCGAGCGGGCGCTGGCCCGGGCAGG
GCGTGCCAATTCCGAGATCAATACGCGCGAGCTGGAACGCGATTGCGCGCTGGGCGCGCCCGAGCGGCGCTGGTTCGAGG
CGGCCCTGGAGCGACTGGGGCTGTCCGCGCGGGCCTATCACCGCATCCTGCGCGTGGCCCGATCGATCGCCGACCTCGAC
GGCGGCGCGGCTCTGCTCGATCGCGCACACCTGGCTGAGGCCCTGCAATACCGGCGTTTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.4

100

0.554
  comM Vibrio campbellii strain DS40M4

54.15

100

0.548
  comM Haemophilus influenzae Rd KW20

53.77

100

0.542
  comM Glaesserella parasuis strain SC1401

52.883

100

0.532
  comM Legionella pneumophila str. Paris

51.303

99.8

0.512
  comM Legionella pneumophila strain ERS1305867

51.303

99.8

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.291

99.8

0.452