Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LPA45_RS01375 Genome accession   NZ_CP088083
Coordinates   291530..293074 (-) Length   514 a.a.
NCBI ID   WP_367394813.1    Uniprot ID   -
Organism   Cupriavidus sp. Agwp_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 286530..298074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPA45_RS01345 (LPA45_01340) - 286769..287401 (+) 633 WP_376790625.1 hypothetical protein -
  LPA45_RS01350 (LPA45_01345) - 287484..288143 (+) 660 WP_116316967.1 LysE family transporter -
  LPA45_RS01355 (LPA45_01350) - 288215..288385 (+) 171 WP_317923414.1 hypothetical protein -
  LPA45_RS01360 (LPA45_01355) - 288394..288636 (-) 243 WP_367394811.1 UTRA domain-containing protein -
  LPA45_RS01365 (LPA45_01360) nagA 288800..289903 (+) 1104 WP_367394812.1 N-acetylglucosamine-6-phosphate deacetylase -
  LPA45_RS01370 (LPA45_01365) zwf 289975..291462 (+) 1488 WP_116316969.1 glucose-6-phosphate dehydrogenase -
  LPA45_RS01375 (LPA45_01370) comM 291530..293074 (-) 1545 WP_367394813.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LPA45_RS01380 (LPA45_01375) - 293181..293459 (-) 279 WP_029046713.1 accessory factor UbiK family protein -
  LPA45_RS01385 (LPA45_01380) - 293850..294644 (+) 795 WP_116316971.1 TorF family putative porin -
  LPA45_RS01390 (LPA45_01385) - 294699..295037 (+) 339 WP_010814843.1 P-II family nitrogen regulator -
  LPA45_RS01395 (LPA45_01390) - 295070..296620 (+) 1551 WP_116316972.1 ammonium transporter -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54514.44 Da        Isoelectric Point: 8.0012

>NTDB_id=632611 LPA45_RS01375 WP_367394813.1 291530..293074(-) (comM) [Cupriavidus sp. Agwp_2]
MSLAVLGSRALTGIAAPPVRVETHLANGLPVFTIVGLADTGVRESRERVRAAILNSGYEFPNRRITVNLAPADLPKESGR
FDLAITLGILAASGQIPADALDHHEFAAELSLSGELRPVRGALAMAMGLAQDNAARHGAGAAPRAFLVARDNGSEAALIE
DLAVHAAATLREVCEHLGALPDARLPRAAPAALPQSVASGPDMRDVRGQAQARRAMEVAAAGKHSALLVGPPGTGKSMLA
QRLPGLLPPMSLQEALESAAVMSLTPGGFRTALWGQRSCRAPHHTASGPAMVGGGGNPRPGEISLAHHGVLFLDELPEFD
RRVLEVLREPLESGRITIARANGHADFPASFQFVAAMNPCPCGYLGHPDRPCRCTPDQVRRYQSRISGPMLDRIDLQVEV
PAQDQGEMLDGPPGEPSAAVRERVLAARMLQLTRQGKPNSELGGREIEQHCVPEPHAQALLRGAMTRLAWSARSYFRVLK
VARTIADLEGAAVLSAEHVAEAIQYRRALRMASG

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=632611 LPA45_RS01375 WP_367394813.1 291530..293074(-) (comM) [Cupriavidus sp. Agwp_2]
ATGAGCCTCGCCGTCCTGGGTAGCCGGGCGCTGACCGGGATCGCGGCGCCGCCGGTGCGCGTCGAGACCCACCTGGCCAA
CGGCCTGCCGGTCTTCACCATCGTCGGGCTGGCCGACACCGGCGTGCGCGAGAGCCGCGAGCGCGTGCGCGCCGCCATCC
TCAACAGCGGCTACGAGTTCCCCAACCGCCGCATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGAGTCCGGCCGC
TTCGACCTGGCGATCACGCTGGGCATCCTGGCCGCCAGCGGCCAGATCCCGGCCGATGCGCTCGACCACCATGAATTCGC
CGCCGAGCTGTCCCTGTCCGGCGAGTTGCGGCCGGTGCGCGGCGCGTTGGCCATGGCGATGGGCCTGGCGCAGGACAACG
CCGCGCGCCACGGGGCCGGCGCCGCCCCACGCGCGTTCCTGGTGGCCCGCGACAACGGCTCCGAAGCGGCCTTGATCGAA
GACCTGGCGGTCCACGCCGCCGCCACGCTGCGCGAGGTGTGCGAGCACCTCGGCGCCCTGCCCGACGCCCGCCTGCCGCG
CGCCGCCCCCGCCGCGCTGCCGCAATCGGTTGCCAGCGGCCCCGACATGCGCGACGTGCGCGGCCAGGCGCAGGCGCGCC
GGGCCATGGAAGTGGCAGCCGCAGGCAAGCACTCGGCCCTGCTGGTCGGCCCGCCCGGCACCGGCAAGTCGATGCTGGCC
CAGCGCCTGCCGGGCCTGCTGCCGCCGATGTCGCTGCAGGAAGCACTGGAATCCGCCGCGGTCATGAGCCTGACGCCCGG
CGGCTTCCGTACCGCGCTGTGGGGCCAGCGCTCCTGCCGCGCGCCGCACCACACCGCGTCGGGCCCGGCCATGGTTGGCG
GCGGCGGCAACCCGCGCCCCGGCGAGATCTCGCTGGCGCACCACGGTGTGCTGTTCCTGGATGAACTGCCGGAGTTCGAC
CGCCGCGTGCTGGAAGTCCTGCGCGAGCCGCTGGAATCCGGGCGCATCACCATCGCGCGCGCCAACGGGCATGCCGACTT
CCCTGCCAGCTTCCAGTTCGTGGCGGCGATGAACCCGTGCCCGTGCGGCTACCTGGGCCATCCTGACCGCCCCTGCCGCT
GCACGCCCGATCAGGTGCGGCGGTATCAGTCGCGCATCTCCGGGCCGATGCTCGACCGGATCGACCTGCAGGTGGAAGTG
CCCGCCCAGGACCAGGGCGAGATGCTCGACGGCCCGCCCGGCGAACCCAGCGCCGCGGTGCGCGAACGCGTGCTGGCGGC
GCGCATGCTGCAGCTGACCCGGCAAGGCAAGCCCAACAGCGAACTGGGCGGGCGCGAGATCGAGCAGCACTGCGTGCCGG
AGCCGCACGCACAGGCGCTGCTGCGCGGGGCGATGACGCGGCTGGCGTGGTCGGCACGCTCCTACTTCCGTGTACTGAAG
GTGGCGCGCACGATTGCCGACCTGGAAGGCGCGGCGGTACTGAGCGCCGAGCATGTAGCCGAGGCGATCCAGTACCGGCG
CGCGCTGCGGATGGCATCCGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.657

99.805

0.516
  comM Vibrio campbellii strain DS40M4

51.172

99.611

0.51
  comM Haemophilus influenzae Rd KW20

49.13

100

0.494
  comM Glaesserella parasuis strain SC1401

47.683

100

0.481
  comM Legionella pneumophila str. Paris

47.767

100

0.479
  comM Legionella pneumophila strain ERS1305867

47.767

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.58

100

0.436