Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SPICUR_RS01265 Genome accession   NC_022664
Coordinates   257562..259091 (-) Length   509 a.a.
NCBI ID   WP_023365239.1    Uniprot ID   U5T543
Organism   Spiribacter curvatus     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 252562..264091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPICUR_RS01250 (SPICUR_01270) - 253713..254222 (+) 510 WP_158499820.1 c-type cytochrome -
  SPICUR_RS01255 (SPICUR_01275) - 254251..256248 (-) 1998 WP_023365235.1 monovalent cation:proton antiporter family protein -
  SPICUR_RS01260 (SPICUR_01280) - 256270..257532 (-) 1263 WP_023365237.1 D-amino acid dehydrogenase -
  SPICUR_RS01265 (SPICUR_01285) comM 257562..259091 (-) 1530 WP_023365239.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SPICUR_RS01270 (SPICUR_01290) ubiK 259138..259419 (-) 282 WP_023365241.1 ubiquinone biosynthesis accessory factor UbiK -
  SPICUR_RS01275 (SPICUR_01295) glnK 259671..260009 (+) 339 WP_023365243.1 P-II family nitrogen regulator -
  SPICUR_RS01280 (SPICUR_01300) - 260032..261279 (+) 1248 WP_023365245.1 ammonium transporter -
  SPICUR_RS01285 (SPICUR_01305) - 261402..262286 (+) 885 WP_041381557.1 NAD(P)-dependent oxidoreductase -
  SPICUR_RS01290 (SPICUR_01310) - 262313..262960 (-) 648 WP_077176292.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 54431.99 Da        Isoelectric Point: 8.1585

>NTDB_id=63261 SPICUR_RS01265 WP_023365239.1 257562..259091(-) (comM) [Spiribacter curvatus]
MSLALIQARAAVGIDAPRVDVEVHLGGGLPSLSIVGLPNTAVREARDRVRGALTTSGFEFPRRRITVSLAPADLPKDGAR
FDLAIALGILVASGQLPRERLDNTVVCAELALSGSLRPVNGTLPVALRCAAAGESLVVANANGAEAALAGGEVYGADHLL
DVCRHLTATSFLPAAQPDTPVNPPQPLDLSDVIGQSHARRALEIAAAGGHSLLLSGPPGSGKSLMAARLPGLLPAMNDTE
AMESASLHSIAKGQFDPRDWRQRPFRSPHHSASPRALTGGGARPRPGEISLAHHGVLFLDELPEFPREALEALREPLETA
EISISRARAQIRFPARFQLVAAMNPCPCGHHGESDHDCRCTPGQIRQYGNRISGPLLDRIDLQINVPRLTATELDQAREG
EPTVTVAARVEAARARQIDRDGLAATHLPVNVMRRDAGLDPAGQALMKQATERFAMSARGWHRCWRIARTIADLEGTTAI
REHHVAEALSYRERVRSDPPRRPFRPAAG

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=63261 SPICUR_RS01265 WP_023365239.1 257562..259091(-) (comM) [Spiribacter curvatus]
ATGTCACTGGCACTCATTCAGGCCCGCGCCGCCGTCGGGATTGACGCACCGCGCGTGGATGTCGAAGTCCATCTCGGTGG
TGGCCTACCCTCGCTATCCATTGTCGGGCTACCCAACACGGCCGTGCGCGAGGCGCGGGACCGCGTCCGTGGGGCGCTGA
CCACCAGCGGTTTCGAGTTTCCCCGCCGGCGCATCACCGTCAGCCTCGCCCCCGCCGATCTGCCCAAGGACGGTGCCCGC
TTCGATCTGGCGATCGCACTGGGCATACTCGTGGCATCCGGCCAACTGCCCCGTGAGCGGCTCGACAATACCGTGGTCTG
CGCCGAACTCGCCCTGTCCGGCAGTCTCCGACCGGTCAACGGCACGCTGCCGGTGGCGTTGCGCTGCGCGGCGGCGGGGG
AATCGCTGGTCGTCGCGAACGCCAATGGCGCCGAGGCGGCACTGGCCGGCGGTGAGGTATATGGTGCCGATCATCTGCTC
GACGTGTGCCGCCATCTCACCGCTACCTCCTTCCTGCCGGCGGCCCAACCGGATACGCCTGTCAATCCGCCTCAGCCACT
CGATCTGAGTGATGTCATCGGTCAGTCCCACGCCCGGCGCGCCCTGGAAATCGCGGCAGCCGGTGGGCACAGTCTGCTGT
TATCGGGACCACCGGGCAGCGGCAAGAGCCTGATGGCCGCCCGATTGCCGGGGCTGCTGCCGGCGATGAACGATACCGAG
GCCATGGAATCAGCATCACTGCACTCCATTGCCAAGGGGCAGTTCGATCCCCGCGACTGGCGTCAGCGGCCGTTCCGAAG
CCCACATCACAGCGCCTCGCCTCGGGCACTGACAGGCGGCGGCGCCCGTCCGCGGCCCGGCGAGATATCACTGGCCCACC
ACGGCGTCCTGTTCCTCGATGAGCTCCCCGAGTTCCCGCGCGAGGCGCTGGAGGCCCTGCGAGAACCGCTGGAGACCGCG
GAGATCAGTATCTCCCGCGCCAGGGCCCAGATCCGCTTTCCTGCGCGTTTCCAGCTCGTTGCGGCCATGAACCCCTGCCC
CTGCGGCCATCACGGCGAGTCCGACCACGATTGCCGCTGCACACCCGGCCAGATCCGCCAGTACGGCAACCGCATCAGCG
GACCACTCCTCGATCGCATCGACCTGCAGATCAACGTCCCACGGCTGACCGCCACCGAACTCGACCAGGCCCGAGAGGGC
GAGCCAACGGTCACGGTAGCGGCCCGGGTCGAGGCCGCACGCGCCCGACAGATCGATCGTGACGGTCTCGCCGCTACCCA
TCTCCCGGTCAACGTCATGCGTCGCGATGCCGGTCTGGACCCGGCTGGCCAGGCCCTGATGAAACAGGCGACAGAGCGTT
TCGCGATGTCCGCGCGCGGATGGCATCGATGCTGGCGGATTGCCCGGACCATCGCCGATCTGGAGGGCACCACGGCGATC
CGGGAACACCATGTCGCCGAGGCGTTGTCTTATCGGGAGCGGGTCCGATCTGACCCCCCGCGGAGACCGTTCCGCCCTGC
AGCAGGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5T543

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

49.901

98.821

0.493
  comM Vibrio cholerae strain A1552

50.505

97.25

0.491
  comM Vibrio campbellii strain DS40M4

49.899

97.25

0.485
  comM Legionella pneumophila str. Paris

48.902

98.428

0.481
  comM Legionella pneumophila strain ERS1305867

48.902

98.428

0.481
  comM Glaesserella parasuis strain SC1401

48.898

98.035

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.036

98.625

0.405

Multiple sequence alignment