Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LQZ07_RS03300 Genome accession   NZ_CP088080
Coordinates   714758..715360 (+) Length   200 a.a.
NCBI ID   WP_256471406.1    Uniprot ID   -
Organism   Agarivorans sp. B2Z047     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 709758..720360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQZ07_RS03275 (LQZ07_03275) - 709914..710912 (+) 999 WP_152783308.1 DNA/RNA non-specific endonuclease -
  LQZ07_RS03280 (LQZ07_03280) - 711184..712566 (-) 1383 WP_194164150.1 DEAD/DEAH box helicase -
  LQZ07_RS03285 (LQZ07_03285) - 712568..713101 (-) 534 WP_194164151.1 hypothetical protein -
  LQZ07_RS03290 (LQZ07_03290) - 713229..713435 (+) 207 WP_152783312.1 helix-turn-helix domain-containing protein -
  LQZ07_RS03295 (LQZ07_03295) - 713863..714363 (-) 501 WP_152783314.1 hypothetical protein -
  LQZ07_RS03300 (LQZ07_03300) comM 714758..715360 (+) 603 WP_256471406.1 ATP-binding protein Machinery gene
  LQZ07_RS03305 (LQZ07_03305) - 715823..716218 (+) 396 WP_016402299.1 hypothetical protein -
  LQZ07_RS03310 (LQZ07_03310) recC 716329..719682 (+) 3354 WP_152783315.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22539.78 Da        Isoelectric Point: 10.4501

>NTDB_id=632568 LQZ07_RS03300 WP_256471406.1 714758..715360(+) (comM) [Agarivorans sp. B2Z047]
MPEFARSTLDALRQPLESGEVHISRAALQVRFPSRFQLVAAMNPSPCGYYQGQQLRSNPDQILKYLGKLSGPFLDRFDLS
VEVAELPKGSLTQHAQGESSAMIKQRVINARKLQLERSGKLNSQLSGKELHQHASLSLENSEFLESSISQLGLSARAFHR
VWRLARTIADLKQQKDIQRNDIVEALSYRAMDRLLKRLSA

Nucleotide


Download         Length: 603 bp        

>NTDB_id=632568 LQZ07_RS03300 WP_256471406.1 714758..715360(+) (comM) [Agarivorans sp. B2Z047]
ATTCCAGAGTTTGCTCGTAGTACTTTAGATGCTTTGCGCCAGCCGCTTGAGTCGGGTGAGGTGCATATTTCTCGTGCTGC
TTTGCAGGTGCGCTTTCCTTCGCGATTCCAGTTAGTGGCGGCGATGAACCCTTCGCCTTGTGGTTACTATCAAGGTCAGC
AGCTACGCAGTAATCCTGATCAAATCTTGAAATATCTTGGTAAGCTATCGGGGCCATTTTTAGACCGCTTTGATTTAAGT
GTTGAGGTAGCTGAATTACCCAAAGGCAGCTTAACTCAGCATGCGCAGGGAGAGTCTAGTGCCATGATAAAACAGCGGGT
GATTAACGCGCGCAAGCTGCAGTTAGAGCGCAGCGGTAAGTTAAATAGTCAACTCTCTGGTAAAGAGCTTCACCAGCATG
CCAGTTTAAGCCTTGAAAATAGTGAGTTTTTAGAAAGCAGTATTAGCCAATTAGGTTTATCTGCTCGCGCATTTCATCGC
GTTTGGCGCTTGGCTAGAACCATTGCCGATCTAAAGCAGCAAAAAGATATTCAACGCAATGACATTGTGGAAGCACTAAG
CTATCGGGCAATGGATCGCTTACTTAAGCGTTTGTCTGCCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(97-189)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(1-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.711

100

0.58
  comM Vibrio campbellii strain DS40M4

55.721

100

0.56
  comM Glaesserella parasuis strain SC1401

55

100

0.55
  comM Haemophilus influenzae Rd KW20

54

100

0.54
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.929

99

0.425
  comM Legionella pneumophila str. Paris

42.268

97

0.41
  comM Legionella pneumophila strain ERS1305867

42.268

97

0.41