Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LQF05_RS18280 Genome accession   NZ_CP088004
Coordinates   3912706..3914202 (+) Length   498 a.a.
NCBI ID   WP_019405714.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain SB-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3907706..3919202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF05_RS18250 (LQF05_18235) sutA 3908018..3908347 (-) 330 WP_011911739.1 transcriptional regulator SutA -
  LQF05_RS18255 (LQF05_18240) - 3908425..3908850 (-) 426 WP_011911738.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LQF05_RS18260 (LQF05_18245) - 3908952..3910202 (-) 1251 WP_013981622.1 ammonium transporter -
  LQF05_RS18265 (LQF05_18250) - 3910319..3911635 (-) 1317 WP_270066934.1 ammonium transporter -
  LQF05_RS18270 (LQF05_18255) glnK 3911674..3912012 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  LQF05_RS18275 (LQF05_18260) - 3912409..3912669 (+) 261 WP_013981620.1 accessory factor UbiK family protein -
  LQF05_RS18280 (LQF05_18265) comM 3912706..3914202 (+) 1497 WP_019405714.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LQF05_RS18285 (LQF05_18270) - 3914332..3916305 (+) 1974 WP_270066935.1 BCCT family transporter -
  LQF05_RS18290 (LQF05_18275) - 3916345..3917982 (-) 1638 WP_017246172.1 putative bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53127.05 Da        Isoelectric Point: 7.7464

>NTDB_id=632311 LQF05_RS18280 WP_019405714.1 3912706..3914202(+) (comM) [Stutzerimonas stutzeri strain SB-1]
MSLAIVHSRAQIGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGERLEQLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVFAAEHL
LEVAAHFNGVTPLEPYVAQGLLRQVQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLQHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNAAPQT
AQSSAVLAAQVAEARRLQLARQGCANAFLDLVGLREHCQLTAEDQAWLERACERLALSLRAAHRLLKVARTLADLEQAER
IGRQHLAEALQYRPGSQA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=632311 LQF05_RS18280 WP_019405714.1 3912706..3914202(+) (comM) [Stutzerimonas stutzeri strain SB-1]
ATGTCCCTGGCCATCGTCCATAGCCGCGCTCAGATCGGCGTCGAAGCCCCGGCGGTGACCGTCGAGGCGCATCTGGCCAA
CGGCCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCCGTCAAGGAGAGCAAGGACCGGGTGCGCAGCGCCATCC
TTACCTCCGGTTTCGATTTCCCCGCCCGACGCATCACGCTCAATCTCGCCCCTGCCGATCTGCCCAAGGACGGTGGTCGC
TTCGACCTGGCCATCGCGCTGGGCATCCTCGCCGCCAGCGGACAGCTGCCCGGCGAACGTCTGGAGCAGCTGGAATGCCT
GGGCGAACTGGCGTTGTCCGGCGCCTTGCGCCCGGTCCAGGGCGTGCTGCCGGCCGCCCTCGCCGCGCGTGCCGCCGGCC
GTGCGCTGCTGGTGCCGCGAGCCAATGCCGAGGAAGCCAGCCTCGCCTCGGGCCTGACCGTGTTTGCCGCCGAGCATCTG
CTGGAAGTTGCCGCCCACTTCAACGGCGTTACCCCGCTCGAGCCCTACGTGGCCCAGGGGCTGCTGCGGCAGGTCCAGCC
CTACCCCGACCTGGCCGACGTACAGGGCCAGCAGGCGGCCAAACGCGGCCTGCTGATCGCCGCGGCCGGCGCACACAACC
TGCTGTTCTCCGGACCGCCCGGCACCGGCAAGACGCTATTGGCCAGCCGTCTGCCCGGCCTGCTGCCGCCGCTGGATGAG
CAGGAGGCGCTGGAAGTGGCCGCGATTCATTCGGTGGCCAGCCACAGCCCGCTGCAGCACTGGCCGCAGCGCCCGTTCCG
CCAGCCCCATCACAGTGCATCGGGCCCGGCACTGGTGGGTGGCGGCAGCCGGCCGCAACCGGGCGAGATCACCCTGGCGC
ATCAGGGTGTGCTGTTTCTCGACGAGCTACCGGAGTTCGACCGCAAGGTGCTGGAGGTGCTGCGCGAGCCACTGGAATCG
GGCCATATCGTCATCGCCCGGGCGCGGGACAAGGTGCGTTTTCCGGCGCGTTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCGTGCGGCTATCTGGGCGACCCTAATGGTCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGCAACAAGCTCT
CCGGACCGCTGCTCGACCGCATCGACCTGCATCTGACCGTGGCGCGCGAGGCCACCGCCCTCAACGCAGCGCCACAGACC
GCCCAGAGCAGCGCCGTGCTCGCCGCACAGGTGGCCGAGGCGCGGCGACTGCAACTCGCCCGCCAGGGCTGCGCCAACGC
CTTTCTCGACCTGGTCGGCCTGCGTGAGCACTGCCAGCTGACCGCCGAGGACCAGGCCTGGCTGGAGCGCGCCTGCGAGC
GTCTCGCACTGTCCCTGCGCGCCGCACACCGGTTGCTCAAGGTCGCACGCACCCTGGCCGACCTGGAGCAGGCCGAACGC
ATCGGCCGGCAACATCTGGCCGAAGCGCTGCAATATCGCCCCGGCAGCCAGGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.566

99.398

0.562
  comM Glaesserella parasuis strain SC1401

55.578

100

0.56
  comM Vibrio campbellii strain DS40M4

56.162

99.398

0.558
  comM Haemophilus influenzae Rd KW20

54.89

100

0.552
  comM Legionella pneumophila str. Paris

50.988

100

0.518
  comM Legionella pneumophila strain ERS1305867

50.988

100

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.464