Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOC50_RS14330 Genome accession   NZ_CP087995
Coordinates   3038775..3040286 (+) Length   503 a.a.
NCBI ID   WP_036980878.1    Uniprot ID   A0A9W4W6Z3
Organism   Pseudoalteromonas sp. SCSIO 43095     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3033775..3045286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC50_RS14295 (LOC50_14285) yrfG 3034288..3034935 (-) 648 WP_069440199.1 GMP/IMP nucleotidase -
  LOC50_RS14300 (LOC50_14290) nudE 3035222..3035794 (+) 573 WP_024601288.1 ADP compounds hydrolase NudE -
  LOC50_RS14305 (LOC50_14295) cysQ 3035787..3036584 (+) 798 WP_036980876.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LOC50_RS14325 (LOC50_14315) - 3038126..3038740 (+) 615 WP_024601286.1 trimeric intracellular cation channel family protein -
  LOC50_RS14330 (LOC50_14320) comM 3038775..3040286 (+) 1512 WP_036980878.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LOC50_RS14335 (LOC50_14325) - 3040283..3040987 (-) 705 WP_013463763.1 response regulator transcription factor -
  LOC50_RS14340 (LOC50_14330) - 3041152..3043644 (-) 2493 WP_250653406.1 prolyl oligopeptidase family serine peptidase -
  LOC50_RS14345 (LOC50_14335) - 3043729..3044796 (+) 1068 WP_036980883.1 hemolysin family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55096.17 Da        Isoelectric Point: 6.8719

>NTDB_id=632194 LOC50_RS14330 WP_036980878.1 3038775..3040286(+) (comM) [Pseudoalteromonas sp. SCSIO 43095]
MSLARIFSRAQVGINAPEVMVEVHLGNGLPAFHIVGLPEASVKEAKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQIVCPDIHKYEFYGELALNGEIRAVNAILPSVLGAKEQNRCCFLPLENDSLASLVSGVKRKAVSSI
QEVWGDLLNQQPLPLNITYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMSTIMPTMS
DDEAIDTAALYSIIGHSIDLTNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGTVTISRAARQMEFPAQFQLIAALNPSPTGCHHDKRATPDQVMRYLSRVSGPFIDRIDLQIELPRLSSVELQSTTAEE
TSAEVRARVEAAYAIQLKRQGKVNARLNNKEMSLYCELPAAELQFLARASEKLALSPRSYHRVIKVARTISDLKGAPQIS
LNELKEALNYRAFERLLSQLTQY

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=632194 LOC50_RS14330 WP_036980878.1 3038775..3040286(+) (comM) [Pseudoalteromonas sp. SCSIO 43095]
ATGTCATTAGCCCGTATATTTTCTCGCGCACAAGTAGGAATTAATGCCCCCGAGGTTATGGTTGAAGTGCATTTAGGGAA
TGGTTTACCTGCATTTCATATTGTCGGCTTACCCGAAGCATCGGTTAAAGAGGCCAAGGATAGAGTACGCAGCGCCCTTG
AAAACTCTCAATTTGGATTTCCCGATCAACGTATCACCGTTAATTTAGCACCTGCCGATTTACCAAAAGACGGCGGGCGG
TTTGACCTTGCGATTGCGGTAGGCATTTTGGTCGCATCGGGGCAAATAGTCTGCCCTGATATTCATAAGTATGAGTTTTA
TGGTGAGCTTGCACTTAATGGTGAAATACGTGCAGTAAATGCTATTTTACCCTCAGTGCTTGGAGCTAAAGAGCAAAACC
GTTGCTGTTTTCTTCCTCTTGAAAACGATAGTTTGGCCAGCCTTGTCAGCGGTGTAAAACGAAAAGCGGTAAGCTCTATA
CAAGAGGTGTGGGGAGACTTACTCAACCAACAACCTTTACCATTGAATATTACCTACCCTGACTGTACCCAAGCGCCAGA
CTTTTTACTCGATTTAAGTGATGTAAAAGGCCAACCCGGTGCTAAACGAGTACTAGAAATTGCTGCCGCAGGTGGACATA
ACCTACTATTTTTAGGACCACCAGGAACCGGTAAATCAATGCTTGCGCAACGAATGTCTACAATAATGCCAACCATGTCA
GATGATGAAGCCATTGATACTGCCGCTTTGTATTCCATTATTGGCCACTCAATCGATTTAACCAATTGGCGTCAGCGACC
ATTTCGAAATCCTCATCACACTTGCTCTGCCGTTGCGCTGGTAGGCGGTTCGTCTAACCCTAAACCCGGTGAAATATCGT
TAGCGCACAATGGTGTATTATTTTTAGATGAGCTGCCTGAATTTGAGCGCAAAGTACTGGACTCGTTACGAGAACCAATG
GAAACCGGAACCGTGACGATTTCGCGCGCGGCAAGACAAATGGAATTTCCGGCACAGTTTCAGCTTATTGCAGCACTTAA
TCCCAGCCCGACTGGGTGCCATCATGATAAACGGGCGACCCCTGATCAAGTGATGCGTTATTTATCGCGGGTATCGGGAC
CGTTTATCGATAGAATTGATTTGCAAATTGAGCTCCCTAGACTAAGCAGCGTGGAGCTACAAAGTACGACTGCAGAAGAA
ACCAGTGCTGAAGTGAGAGCGCGAGTAGAAGCGGCTTATGCAATACAATTAAAACGCCAAGGTAAAGTAAATGCGCGGCT
AAATAACAAAGAAATGAGCTTATACTGCGAGTTACCCGCTGCGGAGCTACAGTTTTTAGCTAGAGCAAGTGAAAAGCTGG
CGTTATCGCCGCGCTCTTATCATAGAGTGATAAAAGTAGCGCGTACCATTAGTGATTTAAAAGGCGCGCCACAAATTAGT
TTAAATGAGCTTAAAGAAGCACTTAATTATCGGGCATTTGAGCGTTTATTATCGCAGTTAACCCAATACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.754

100

0.559
  comM Haemophilus influenzae Rd KW20

54.331

100

0.549
  comM Vibrio campbellii strain DS40M4

54.167

100

0.543
  comM Glaesserella parasuis strain SC1401

53.755

100

0.541
  comM Legionella pneumophila str. Paris

50.302

98.807

0.497
  comM Legionella pneumophila strain ERS1305867

50.302

98.807

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.095

100

0.423