Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LP418_RS28180 Genome accession   NZ_CP087968
Coordinates   4257625..4257966 (-) Length   113 a.a.
NCBI ID   WP_257957218.1    Uniprot ID   -
Organism   Nocardioides sp. B-3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4252625..4262966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP418_RS28160 (LP418_26750) thrS 4253278..4255263 (-) 1986 Protein_5700 threonine--tRNA ligase -
  LP418_RS28165 (LP418_26755) - 4255369..4255827 (+) 459 WP_257954530.1 histidine phosphatase family protein -
  LP418_RS28170 (LP418_26760) - 4255853..4256251 (+) 399 WP_257954531.1 ClpX C4-type zinc finger protein -
  LP418_RS28175 (LP418_26765) - 4256466..4257221 (+) 756 WP_257954532.1 SGNH/GDSL hydrolase family protein -
  LP418_RS28180 (LP418_26770) rcrQ 4257625..4257966 (-) 342 WP_257957218.1 ATP-binding cassette domain-containing protein Regulator
  LP418_RS31855 - 4258140..4258397 (-) 258 Protein_5705 ATP-binding cassette domain-containing protein -
  LP418_RS28190 (LP418_26780) - 4258564..4259187 (-) 624 Protein_5706 ABC transporter transmembrane domain-containing protein -
  LP418_RS28195 (LP418_26785) - 4259440..4260177 (-) 738 WP_257954533.1 SDR family oxidoreductase -
  LP418_RS28200 (LP418_26790) - 4260270..4260335 (-) 66 Protein_5708 hypothetical protein -
  LP418_RS28205 (LP418_26795) - 4260383..4260889 (-) 507 WP_257954534.1 SDR family oxidoreductase -
  LP418_RS28210 - 4260828..4261019 (-) 192 Protein_5710 SDR family oxidoreductase -
  LP418_RS28215 - 4261245..4261604 (+) 360 Protein_5711 enoyl-CoA hydratase-related protein -
  LP418_RS28220 - 4261699..4261992 (+) 294 WP_257957219.1 enoyl-CoA hydratase-related protein -
  LP418_RS28225 (LP418_26805) - 4262010..4262858 (+) 849 WP_257957220.1 CoA-transferase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12271.02 Da        Isoelectric Point: 8.1042

>NTDB_id=632092 LP418_RS28180 WP_257957218.1 4257625..4257966(-) (rcrQ) [Nocardioides sp. B-3]
MGERGVTLSGGQRQRLALARALLRDPAVLVLDEATSAVDNETEAAIQRSLRRATAQCTALVVAHRLSTVRHAHRIWVLDA
GRVIEGGTHDDLLALDGVYAALWRVQTGELVPR

Nucleotide


Download         Length: 342 bp        

>NTDB_id=632092 LP418_RS28180 WP_257957218.1 4257625..4257966(-) (rcrQ) [Nocardioides sp. B-3]
GTGGGGGAGCGAGGCGTCACCCTCTCCGGCGGCCAGCGCCAGCGGCTCGCCCTCGCCCGCGCGCTGCTCCGCGACCCGGC
CGTCCTCGTGCTCGACGAGGCGACCAGTGCCGTCGACAACGAGACCGAGGCCGCGATCCAGCGCTCACTGCGACGGGCCA
CCGCCCAGTGCACCGCGCTCGTCGTCGCCCACCGGCTCTCGACCGTCCGGCACGCCCACCGGATCTGGGTGCTCGACGCC
GGCCGGGTCATCGAGGGTGGCACCCACGACGACCTGCTCGCGCTCGACGGCGTTTACGCCGCACTGTGGCGGGTGCAGAC
CGGCGAGCTCGTGCCTCGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(5-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.887

93.805

0.487
  comA Streptococcus mitis NCTC 12261

50

86.726

0.434
  comA Streptococcus pneumoniae TIGR4

50

86.726

0.434
  comA Streptococcus pneumoniae Rx1

50

86.726

0.434
  comA Streptococcus pneumoniae D39

50

86.726

0.434
  comA Streptococcus pneumoniae R6

50

86.726

0.434
  comA/nlmT Streptococcus mutans UA159

48.485

87.611

0.425
  comA Streptococcus mitis SK321

47.959

86.726

0.416
  comA Streptococcus gordonii str. Challis substr. CH1

46.939

86.726

0.407
  rcrP Streptococcus mutans UA159

44.444

87.611

0.389