Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N5932_RS12895 Genome accession   NZ_CP104645
Coordinates   2562993..2563529 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain PNUSAE019785     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2557993..2568529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5932_RS12875 (N5932_12875) aphA 2558281..2558994 (+) 714 WP_001226923.1 acid phosphatase AphA -
  N5932_RS12880 (N5932_12880) yjbQ 2559105..2559521 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  N5932_RS12885 (N5932_12885) yjbR 2559525..2559881 (+) 357 WP_000155652.1 MmcQ/YjbR family DNA-binding protein -
  N5932_RS12890 (N5932_12890) uvrA 2559916..2562738 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  N5932_RS12895 (N5932_12895) ssb 2562993..2563529 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  N5932_RS12900 (N5932_12900) yjcB 2563628..2563909 (-) 282 WP_001295689.1 YjcB family protein -
  N5932_RS12905 (N5932_12905) pdeC 2564338..2565924 (+) 1587 WP_001016522.1 c-di-GMP phosphodiesterase PdeC -
  N5932_RS12910 (N5932_12910) soxS 2565927..2566250 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  N5932_RS12915 (N5932_12915) soxR 2566336..2566800 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=632062 N5932_RS12895 WP_000168305.1 2562993..2563529(+) (ssb) [Escherichia coli strain PNUSAE019785]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=632062 N5932_RS12895 WP_000168305.1 2562993..2563529(+) (ssb) [Escherichia coli strain PNUSAE019785]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489