Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   LOC77_RS15835 Genome accession   NZ_CP087957
Coordinates   3161511..3161651 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain B-001     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3156511..3166651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC77_RS15810 - 3156850..3157233 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  LOC77_RS15815 comA 3157255..3157899 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  LOC77_RS15820 - 3157980..3160272 (-) 2293 Protein_3064 histidine kinase -
  LOC77_RS15825 comX 3160284..3160448 (-) 165 WP_007613432.1 competence pheromone ComX -
  LOC77_RS15830 - 3160448..3161359 (-) 912 WP_014305720.1 polyprenyl synthetase family protein -
  LOC77_RS15835 degQ 3161511..3161651 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LOC77_RS15840 - 3162117..3162458 (+) 342 WP_014305721.1 hypothetical protein -
  LOC77_RS15845 - 3162465..3163685 (-) 1221 WP_230639624.1 EAL and HDOD domain-containing protein -
  LOC77_RS15850 - 3163815..3165281 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  LOC77_RS15855 - 3165299..3165850 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  LOC77_RS15860 - 3165947..3166345 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=632061 LOC77_RS15835 WP_003152043.1 3161511..3161651(-) (degQ) [Bacillus velezensis strain B-001]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=632061 LOC77_RS15835 WP_003152043.1 3161511..3161651(-) (degQ) [Bacillus velezensis strain B-001]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891