Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N5856_RS20215 Genome accession   NZ_CP104613
Coordinates   4193778..4194902 (-) Length   374 a.a.
NCBI ID   WP_094318210.1    Uniprot ID   -
Organism   Escherichia coli strain AHM8C212RI     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4188778..4199902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5856_RS20185 (N5856_20120) yrdA 4190578..4191132 (+) 555 WP_001286216.1 gamma carbonic anhydrase family protein -
  N5856_RS20190 (N5856_20125) yrdB 4191108..4191365 (-) 258 WP_001070563.1 DUF1488 domain-containing protein -
  N5856_RS20195 (N5856_20130) aroE 4191362..4192180 (-) 819 WP_077039915.1 shikimate dehydrogenase -
  N5856_RS20200 (N5856_20135) tsaC 4192185..4192757 (-) 573 WP_001301437.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  N5856_RS20205 (N5856_20140) yrdD 4192762..4193304 (-) 543 WP_001129723.1 type I DNA topoisomerase -
  N5856_RS20210 (N5856_20145) smg 4193333..4193806 (-) 474 WP_000460672.1 DUF494 family protein Smg -
  N5856_RS20215 (N5856_20150) dprA 4193778..4194902 (-) 1125 WP_094318210.1 DNA-protecting protein DprA Machinery gene
  N5856_RS20220 (N5856_20155) def 4195032..4195541 (+) 510 WP_094318209.1 peptide deformylase -
  N5856_RS20225 (N5856_20160) fmt 4195556..4196503 (+) 948 WP_000004459.1 methionyl-tRNA formyltransferase -
  N5856_RS20230 (N5856_20165) rsmB 4196549..4197838 (+) 1290 WP_001411437.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  N5856_RS20235 (N5856_20170) trkA 4197860..4199236 (+) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  N5856_RS20240 (N5856_20175) mscL 4199366..4199776 (+) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40996.94 Da        Isoelectric Point: 6.3138

>NTDB_id=631752 N5856_RS20215 WP_094318210.1 4193778..4194902(-) (dprA) [Escherichia coli strain AHM8C212RI]
MVDTEIWLRLMSVSSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLSWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLAKRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLATSLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPLGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=631752 N5856_RS20215 WP_094318210.1 4193778..4194902(-) (dprA) [Escherichia coli strain AHM8C212RI]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCGTCAGCAGCTTGTACGGCGATGATATGGTCCGTATCGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCACGAAAGAGTATCGAAAGCTCACTTTCTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGAAGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCGCGTCGCCATGCCCGACTGGCTACCAGTTTGCT
TGAACAGGGTGGGGCACTTGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCAGGTCCATTAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTTACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.509

98.663

0.479
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

44.595

98.93

0.441
  dprA Vibrio cholerae strain A1552

44.595

98.93

0.441
  dprA Glaesserella parasuis strain SC1401

45.104

90.107

0.406
  dprA Haemophilus influenzae Rd KW20

44.214

90.107

0.398
  dprA Legionella pneumophila strain ERS1305867

43.939

88.235

0.388