Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LP108_RS05340 Genome accession   NZ_CP087825
Coordinates   1097587..1098993 (+) Length   468 a.a.
NCBI ID   WP_078273299.1    Uniprot ID   A0A1T0A8Y3
Organism   Moraxella bovis strain SAM102601     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1092587..1103993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP108_RS05320 (LP108_05245) - 1093028..1094338 (+) 1311 WP_078273296.1 S1C family serine protease -
  LP108_RS05325 (LP108_05250) hemF 1094680..1095321 (+) 642 Protein_1052 oxygen-dependent coproporphyrinogen oxidase -
  LP108_RS05330 (LP108_05255) - 1095512..1095988 (+) 477 WP_162860379.1 c-type cytochrome -
  LP108_RS05335 (LP108_05260) sodA 1096335..1096949 (-) 615 WP_029102762.1 superoxide dismutase [Mn] -
  LP108_RS05340 (LP108_05265) radA 1097587..1098993 (+) 1407 WP_078273299.1 DNA repair protein RadA Machinery gene
  LP108_RS05345 (LP108_05270) - 1099029..1099796 (+) 768 WP_078273300.1 ABC transporter permease -
  LP108_RS05350 (LP108_05275) - 1100220..1101257 (+) 1038 WP_078273301.1 ABC transporter substrate-binding protein -
  LP108_RS05355 (LP108_05280) - 1101347..1101823 (+) 477 WP_264676266.1 hypothetical protein -
  LP108_RS05360 (LP108_05285) - 1101855..1102583 (+) 729 WP_078273303.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 49724.25 Da        Isoelectric Point: 7.3452

>NTDB_id=631672 LP108_RS05340 WP_078273299.1 1097587..1098993(+) (radA) [Moraxella bovis strain SAM102601]
MAKKSSYVCQSCGANYGKWSGQCADCGEWNTLTEAPNVAMPHHKKTTTKSAPKTANYAGDSSGVMTLANVGFSLETRMPT
GLGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMASSDSLAGSALYITGEESLSQVAMRAVRLGLPTDRLRVLA
ETNVETICMALTAEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEH
MVDTVLYFEGESDSRFRMIRAVKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQ
ALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIYTSGQDVYVNVVGGVKVMETGSDLAVLIACASSIKEKPLPARLCV
FGEVGLSGEIRPVPNGQERLKEAMKHGFTYAIIPKANAPKVGDKNFANINIIAVDRLDDALIRAFELA

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=631672 LP108_RS05340 WP_078273299.1 1097587..1098993(+) (radA) [Moraxella bovis strain SAM102601]
ATGGCAAAAAAATCCTCTTACGTCTGCCAATCCTGCGGAGCCAATTACGGCAAATGGTCAGGGCAATGTGCCGACTGTGG
CGAATGGAACACCCTCACCGAAGCCCCCAACGTCGCCATGCCCCACCACAAAAAAACCACCACCAAATCCGCCCCGAAAA
CCGCCAACTATGCAGGCGACAGCTCTGGGGTCATGACCCTTGCCAATGTCGGCTTTTCGCTAGAAACCCGTATGCCCACA
GGCTTGGGCGAATTTGACCGTGTGCTTGGCGGTGGGCTTGTGGCAGGCTCGGTGGTGCTGATTGGGGGCGACCCGGGTAT
CGGCAAATCCACAATCCTTTTGCAGACCGCCATTAACATGGCAAGTAGCGACTCGCTGGCTGGCTCGGCTCTATATATCA
CAGGCGAAGAGAGCCTGTCGCAGGTTGCCATGCGTGCGGTGCGACTAGGGCTACCGACCGACCGCCTAAGGGTACTTGCC
GAGACCAACGTTGAGACCATTTGCATGGCTCTGACCGCCGAACAGCCTGCCATTGCCGTCATTGACTCCATTCAGACGCT
CTTTACCGAAGCCATACAGTCCGCCCCAGGGGGCGTCGCCCAAATCCGTGAATCCGCCGCCGTCTTGACACGCTATGCCA
AGCAGACAGGCACGGCACTGTTTTTGGTGGGACACGTTACCAAAGAAGGGGCGTTGGCAGGGCCTCGTGTGCTAGAACAC
ATGGTGGATACGGTGCTGTATTTTGAAGGCGAGTCCGATAGCCGATTTAGAATGATTCGCGCGGTCAAAAACCGTTTTGG
GGCGGTCAATGAACTGGGTATTTTTGGCATGACCGATACAGGTTTAAAGGAAGTTGCCAATCCGTCCGCCATTTTTTTGA
GTCGATATGACAAGCCCATTGCAGGGTCGGTGGTCATGGTCAGCCGTGAAGGCACACGTCCTCTGCTTGTGGAAGTGCAA
GCGTTGGTGGACGATTCGCAAGGTCAGCCCAGACGTATGGCGTTGGGGCTTGATTATCAACGCCTATCCATGCTCCTTGC
GGTCATGCACCGTCATGGCGGTATCTACACGAGCGGTCAGGACGTGTATGTCAATGTCGTGGGCGGGGTCAAGGTCATGG
AGACAGGCTCGGATTTGGCGGTGCTGATTGCCTGTGCGTCTAGCATTAAGGAAAAACCGCTACCTGCACGGCTGTGCGTA
TTTGGTGAAGTGGGACTATCGGGGGAGATTCGCCCTGTGCCAAACGGTCAAGAACGCCTAAAAGAAGCGATGAAACACGG
CTTTACCTACGCCATTATCCCCAAAGCCAACGCCCCCAAAGTAGGCGATAAAAATTTTGCCAATATCAATATCATTGCCG
TGGATAGGCTAGATGATGCGTTGATACGGGCGTTTGAGCTTGCGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-230)

Subunit ChlI of Mg-chelatase (ChlI)

(361-437)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T0A8Y3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.469

100

0.498
  radA Streptococcus mitis NCTC 12261

45.259

99.145

0.449
  radA Streptococcus mitis SK321

45.259

99.145

0.449
  radA Streptococcus pneumoniae Rx1

45.259

99.145

0.449
  radA Streptococcus pneumoniae D39

45.259

99.145

0.449
  radA Streptococcus pneumoniae R6

45.259

99.145

0.449
  radA Streptococcus pneumoniae TIGR4

45.259

99.145

0.449